PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02275.1.g00170.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 667aa    MW: 71584.6 Da    PI: 10.4426
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02275.1.g00170.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.35e-19585619135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Zmw_sc02275.1.g00170.1.am.mk 585 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 619
                                   *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-18579633IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.295579615IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-14582642No hitNo description
Gene3DG3DSA:3.30.50.103.5E-15583617IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.10E-13584641No hitNo description
PROSITE patternPS003440585610IPR000679Zinc finger, GATA-type
PfamPF003205.2E-17585619IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MLVHPSRWMW MRRCFPLFEV QTTIPAPSSR VTPLALETAA GIDEVRNCAV TACRGGDIIR  60
HRRWLNKRRR LPGKDKTTPS PSLHGDYVKT ALEETEEPQL CPFLGLNVGR QQGQGAVPPS  120
LVGAGVLVTS LAGPGQIRRH NAQARARECR QDWCQVARHA KASTRAASGD LSLPGMVSRE  180
VDSVRHQRLT PATRRALPAP QRQRINRTRH PARGATSSAR PMTPSARAHA TNRAANRRSE  240
DAPAGKVPRQ NNLRNGTRSS LPPLLPTSSL PPAPFHPLLL YVRLLQPCSS AAALAMALFL  300
AHHHGSLVET EGRMGALRSS LLPCQVAEEV AAAGAAGPAA WCAGERGVGL FAEGFSVEDL  360
LDLEELCEVD KDVAAELGEA APSSAVEEDK SSDSHGSSSV VSYELMPLPP PVIDLPAHDA  420
EELEWVSRIM DDSLAELPPA SSFALRRQQE PAVSRMVPVP TPTICALSTE ALVPVKAKRS  480
KRLRGSVWSL SGAAPLSDST SSSSTTTTSS CSSSSASFPP LLLLDSSPFA AAHLLEQAPR  540
SKKSKHGKNG KSKLKKRGRK PKHQQPSQFS GADATAPVAS GDRRCSHCGV QKTPQWRAGP  600
EGAKTLCNAC GVRYKSGRLL PEYRPACSPT FVSSIHSNSH RKVLEMRRKK EGLPLVPAAS  660
TPAVTSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16670KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798828.11e-131GATA transcription factor 6-like
TrEMBLA0A2T7F9Q41e-131A0A2T7F9Q4_9POAL; Uncharacterized protein
STRINGSi017219m1e-128(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108