PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02275.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 67aa MW: 7703.7 Da PI: 4.7147 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 64.2 | 4.1e-20 | 18 | 64 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 +ppGfrFhPtdeelv++yL+kkv+++k++l ++ik+vd+yk+ePwdL+ Zmw_sc02275.1.g00050.1.sm.mk 18 VPPGFRFHPTDEELVDYYLRKKVASNKIDL-DIIKDVDLYKIEPWDLQ 64 69****************************.99**************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-20 | 11 | 65 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 22.045 | 18 | 67 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-9 | 19 | 61 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 67 aa Download sequence Send to blast |
MHACPESVVN KMDGSSHVPP GFRFHPTDEE LVDYYLRKKV ASNKIDLDII KDVDLYKIEP 60 WDLQGDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-15 | 17 | 63 | 14 | 60 | Stress-induced transcription factor NAC1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021314804.1 | 6e-30 | uncharacterized protein LOC8078886 isoform X2 | ||||
Swissprot | Q9FWX2 | 6e-26 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A1D6Q628 | 5e-28 | A0A1D6Q628_MAIZE; Putative NAC domain transcription factor superfamily protein | ||||
TrEMBL | A0A438K3B4 | 5e-28 | A0A438K3B4_VITVI; NAC domain-containing protein 7 | ||||
STRING | Pavir.J39804.1.p | 1e-27 | (Panicum virgatum) | ||||
STRING | ORGLA04G0171200.1 | 2e-28 | (Oryza glaberrima) | ||||
STRING | Sb04g033570.1 | 1e-27 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16506 | 9 | 13 |
Publications ? help Back to Top | |||
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