PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02273.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 675aa MW: 72529.7 Da PI: 7.2484

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02273.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	309.3	8.5e-95	178	543	3	372
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 el+l+cA+ ++ gd a+++L l+ a p+gd+ Rla++f++ALa+r+ +++ e ++ +p +++ + +a+ + Zmw_sc02273.1.g00130.1.am.mk 178 ELVLACADRLHCGDVDGARRVLDVLRSVADPRGDAADRLAHHFARALARRVDGKGGEGAA--APAPAP---NMPSPSAYLA 253 7899***********************************************5554443..444444...3455678889 PP GRAS 84 fsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeele 159 ++++ P+l+f+hltaNqaIlea+++ +rvHi+D+d+ +G+QWp Llqa+a+R+ gpp++RiTg g ++++l+ Zmw_sc02273.1.g00130.1.am.mk 254 YNQIAPFLRFAHLTANQAILEAAATGaaRRVHIVDLDVVHGVQWPLLLQAMAKRAdpdLGPPEVRITGAGT----DRDMLR 330 *****************9987667***********************66666*******....** PP GRAS 160 etgerLakfAeelgvpfefnvl...vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237 +tg+rL+ fA++l++pf+f++l ++l + + L+++p+E+la+n+vl lhrl +++l++ +L+ +ks++P+ Zmw_sc02273.1.g00130.1.am.mk 331 RTGDRLRAFASSLNLPFRFDPLllpCPRQLGAGRATGLELHPDETLAINCVLFLHRLG-GEGELAD----FLRWIKSMNPT 406 ******************77667789999********************8.6666666....******* PP GRAS 238 vvvvveqeadhnse...sFlerflealeyysalfdsleaklpreseerikvErellgreivnvva.cegaerrerhetlek 314 vv+++e+e++ ++ ++ +r++ a++yysa+fd+lea +p+ s +r +vE+e+lg+ei +v c g + r +++e Zmw_sc02273.1.g00130.1.am.mk 407 VVTIAEREVSIGADcpdDLPRRVAAAMDYYSAVFDALEAMVPPGSTDRLSVEHEVLGQEIDAAVDpCPGGW---RSRRFEW 484 ******98766779*******************************************7588888...888899 PP GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372 W ++ ++aG++p pls++a++qa++llr ++ s+gy ee++g+ +lgW++r+L+svS+ Zmw_sc02273.1.g00130.1.am.mk 485 WASAARAAGLSPRPLSTFAVSQARYLLRLHYpSEGYVAEESDGACFLGWQTRRLMSVSS 543 *********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	52.277	150	524	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.0E-92	178	543	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence Send to blast
MSGAACLCVH TLDAIWEQRA QLSHSIKLLC LASLLQLFHL LASGTACAVW STGRFRSREL 60 ELVLAPVAAH EGQASMENGG DPRHSWSGTG GMIANSALSS LCRPELRFAC ARAPLVFPSS 120 RRSSISKDYT LPSHALLRTL PPDAAMLGAP GGDRDDDGAA QPQDKRVSPV AAPASPKELV 180 LACADRLHCG DVDGARRVLD VLRSVADPRG DAADRLAHHF ARALARRVDG KGGEGAAAPA 240 PAPNMPSPSA YLAYNQIAPF LRFAHLTANQ AILEAAATGA ARRVHIVDLD VVHGVQWPLL 300 LQAMAKRADP DLGPPEVRIT GAGTDRDMLR RTGDRLRAFA SSLNLPFRFD PLLLPCPRQL 360 GAGRATGLEL HPDETLAINC VLFLHRLGGE GELADFLRWI KSMNPTVVTI AEREVSIGAD 420 CPDDLPRRVA AAMDYYSAVF DALEAMVPPG STDRLSVEHE VLGQEIDAAV DPCPGGWRSR 480 RFEWWASAAR AAGLSPRPLS TFAVSQARYL LRLHYPSEGY VAEESDGACF LGWQTRRLMS 540 VSSDLEGKTM VAPSYVPFCH FLAADTQAAV QWVKKEDEDA VACVTDTLHG ESTIGRSMRG 600 SLGLIQLLNL HRSLLSTTSR LLVSCPVLAQ HETGMIPCIS GQCRPNSSPV SYSPPTRSWG 660 FSKPNTAFGG KPCNP

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence Send to blast

MSGAACLCVH TLDAIWEQRA QLSHSIKLLC LASLLQLFHL LASGTACAVW STGRFRSREL  60
ELVLAPVAAH EGQASMENGG DPRHSWSGTG GMIANSALSS LCRPELRFAC ARAPLVFPSS  120
RRSSISKDYT LPSHALLRTL PPDAAMLGAP GGDRDDDGAA QPQDKRVSPV AAPASPKELV  180
LACADRLHCG DVDGARRVLD VLRSVADPRG DAADRLAHHF ARALARRVDG KGGEGAAAPA  240
PAPNMPSPSA YLAYNQIAPF LRFAHLTANQ AILEAAATGA ARRVHIVDLD VVHGVQWPLL  300
LQAMAKRADP DLGPPEVRIT GAGTDRDMLR RTGDRLRAFA SSLNLPFRFD PLLLPCPRQL  360
GAGRATGLEL HPDETLAINC VLFLHRLGGE GELADFLRWI KSMNPTVVTI AEREVSIGAD  420
CPDDLPRRVA AAMDYYSAVF DALEAMVPPG STDRLSVEHE VLGQEIDAAV DPCPGGWRSR  480
RFEWWASAAR AAGLSPRPLS TFAVSQARYL LRLHYPSEGY VAEESDGACF LGWQTRRLMS  540
VSSDLEGKTM VAPSYVPFCH FLAADTQAAV QWVKKEDEDA VACVTDTLHG ESTIGRSMRG  600
SLGLIQLLNL HRSLLSTTSR LLVSCPVLAQ HETGMIPCIS GQCRPNSSPV SYSPPTRSWG  660
FSKPNTAFGG KPCNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-49	202	543	29	373	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269\|PubMed:12687001}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806722.1	0.0	protein MONOCULM 1
Swissprot	Q84MM9	1e-135	MOC_ORYSJ; Protein MONOCULM 1
TrEMBL	W8VJT6	0.0	W8VJT6_9POAL; Lateral suppressor
STRING	Pavir.J22770.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Publications ? help Back to Top
Li X, et al. Control of tillering in rice. Nature, 2003. 422(6932): p. 618-21 [PMID:12687001] Sun F, et al. Identification and functional analysis of the MOC1 interacting protein 1. J Genet Genomics, 2010. 37(1): p. 69-77 [PMID:20171579] Sanyal A, et al. Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum. Mol. Biol. Evol., 2010. 27(11): p. 2487-506 [PMID:20522726] Yan WH, et al. A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice. Mol Plant, 2011. 4(2): p. 319-30 [PMID:21148627] Xu C, et al. Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering. Nat Commun, 2012. 3: p. 750 [PMID:22434193] Lin Q, et al. Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1. Nat Commun, 2012. 3: p. 752 [PMID:22434195] Liang WH,Shang F,Lin QT,Lou C,Zhang J Tillering and panicle branching genes in rice. Gene, 2014. 537(1): p. 1-5 [PMID:24345551] Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]