PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02255.1.g00100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 299aa MW: 31808.8 Da PI: 10.168 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.3 | 2.4e-15 | 121 | 165 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky Zmw_sc02255.1.g00100.1.am.mkhc 121 PWTEDEHRRFLAGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 165 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.68 | 3 | 18 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 20.171 | 114 | 170 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.99E-18 | 115 | 171 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.4E-19 | 117 | 169 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.2E-11 | 118 | 164 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-11 | 118 | 168 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.72E-10 | 121 | 166 | No hit | No description |
Pfam | PF00249 | 2.4E-12 | 121 | 165 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MARKCSSCGN NGHNSRTCSG GYRSMESTGV CGSSGGVRLF GVQLHVGSSP TPMKKCFSME 60 CLSSSAPAYY AAALAGACSS SPSASSSSSL VSVDETAEKM TNGYLSDGLM GRAQERKKGV 120 PWTEDEHRRF LAGLEKLGKG DWRGISRHFV TTRTPTQVAS HAQKYFLRQS SLTQKKRRSS 180 LFDVVENGEG PTRVNGRLKL RDETSSMSET EFPALSLGVS SWPKPEHALP PGLALAPRFS 240 ASTSSSGSAS PNLIAPRHPS LTTPKPALDL ELKISTARPT DQAAGPPPRT PYLGTIRVT |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00565 | DAP | Transfer from AT5G56840 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625837.1 | 1e-110 | transcription factor MYBS3-like | ||||
TrEMBL | A0A0A9ESZ5 | 1e-139 | A0A0A9ESZ5_ARUDO; Uncharacterized protein | ||||
STRING | ORUFI01G06450.1 | 1e-114 | (Oryza rufipogon) | ||||
STRING | ORGLA01G0055800.1 | 1e-114 | (Oryza glaberrima) | ||||
STRING | OBART01G05900.1 | 1e-114 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4231 | 38 | 73 |