PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02243.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 416aa MW: 47872.2 Da PI: 7.8387

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02243.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	71.3	1.7e-22	91	187	1	84
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 +Wt ++v++L+ a+++++e+++++ +kk++W+ vs +m ergf +sp+qC++k+++lnkryk+++e+ + Zmw_sc02243.1.g00090.1.sm.mk 91 KWTSDMVKLLVSAVSYVDEEVEADHgsgsgrrkhavlKKKGKWKPVSMAMTERGFAVSPQQCEDKFNDLNKRYKRLTEILG 171 7*******************876667788899999*****************************************9 PP trihelix 70 kr.tsessstcpyfdq 84 ++ +++ +++ +++++ Zmw_sc02243.1.g00090.1.sm.mk 172 RGrACKIVEKPALLEK 187 9956887777777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.5E-20	89	214	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MEGNVPPRAL IPGSPFDLEP AMQQPRRQQF HFAQPQVHQG AFAVPEPNPA QELRSVVKTS 60 LSDEEDAYDG LHDNGKTAAA AAAASQWHRV KWTSDMVKLL VSAVSYVDEE VEADHGSGSG 120 RRKHAVLKKK GKWKPVSMAM TERGFAVSPQ QCEDKFNDLN KRYKRLTEIL GRGRACKIVE 180 KPALLEKISL SARLKEEAKK HLNSKHLHYE EMCSYHNRNR FCLLDDPTLQ KSLRMALRSG 240 HEQGTKTSFG YEDEYDQAFV SDDDDEDDEY NDEANARDRH HRGHNTKKLK HDHEKTHYGS 300 HLSEVAAIDM NKMFFEGSGG AAAEKNLRGI HSNQIEQEHL KIKAQMLKIE LRHLKWLRFS 360 KEKDRELEKM RLENEKMAME NKHMELELKL KEIEMVPYIL GYYIKSTRAP EMSKFL

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MEGNVPPRAL IPGSPFDLEP AMQQPRRQQF HFAQPQVHQG AFAVPEPNPA QELRSVVKTS  60
LSDEEDAYDG LHDNGKTAAA AAAASQWHRV KWTSDMVKLL VSAVSYVDEE VEADHGSGSG  120
RRKHAVLKKK GKWKPVSMAM TERGFAVSPQ QCEDKFNDLN KRYKRLTEIL GRGRACKIVE  180
KPALLEKISL SARLKEEAKK HLNSKHLHYE EMCSYHNRNR FCLLDDPTLQ KSLRMALRSG  240
HEQGTKTSFG YEDEYDQAFV SDDDDEDDEY NDEANARDRH HRGHNTKKLK HDHEKTHYGS  300
HLSEVAAIDM NKMFFEGSGG AAAEKNLRGI HSNQIEQEHL KIKAQMLKIE LRHLKWLRFS  360
KEKDRELEKM RLENEKMAME NKHMELELKL KEIEMVPYIL GYYIKSTRAP EMSKFL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952693.1	0.0	uncharacterized protein LOC101766818
Refseq	XP_004952694.1	0.0	uncharacterized protein LOC101766818
TrEMBL	A0A0A9DXA8	0.0	A0A0A9DXA8_ARUDO; Uncharacterized protein
STRING	Si017397m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12774	26	36