PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02235.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family E2F/DP
Protein Properties Length: 411aa    MW: 45107 Da    PI: 9.8296
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02235.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.83.9e-2357122171
                       E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                                   rk+ksL+ll+++f++l+++ + +++ l+++a++L    v  +rRRiYDi+NVLe+++++ +k+kn ++w+g
  Zmw_sc02235.1.g00070.1.sm.mk  57 RKQKSLGLLCSNFVALYNRDHVEHIGLDKAAQSL---GV--ERRRIYDIVNVLESIGILVRKAKNLYTWIG 122
                                   79*****************999************...**..****************************98 PP
2E2F_TDP75.93.9e-24201280170
                       E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwk 70 
                                   rkeksL+lltq+f+kl+ ++e ++++l+e++k L+ e     ++++k+RR+YDi+NVL++lnl+ek     ++k+++rw 
  Zmw_sc02235.1.g00070.1.sm.mk 201 RKEKSLGLLTQNFVKLFLTKEVDTISLDEASKLLLGEgheetNMRTKVRRLYDIANVLSSLNLLEKvhqanTKKPAFRWL 280
                                   79*****************999************************************************999******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.7E-2653123IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.97E-1556121IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.0E-2857122IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.0E-2058122IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.7E-22198281IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.0E-31201281IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.6E-19202280IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.31E-11203280IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MATTPAMAAA ASSVAQACAA AAAAAGMESA LWQQERPRAK AAEGGGPKGA RHHAYSRKQK  60
SLGLLCSNFV ALYNRDHVEH IGLDKAAQSL GVERRRIYDI VNVLESIGIL VRKAKNLYTW  120
IGFDGIPIAL RELKDRALRE KSGLAPSQME QLSAANVSDD EDDDKLGDPD GDTDSEKLSQ  180
TVDNPSDKPG ASQCRLRSDH RKEKSLGLLT QNFVKLFLTK EVDTISLDEA SKLLLGEGHE  240
ETNMRTKVRR LYDIANVLSS LNLLEKVHQA NTKKPAFRWL AKAGKPKTET GVTFAVSPSA  300
KSVTNKRTFG TDITNIDMNR SNLDSTIPKK AKLAYSGSDI LKSCKLSVQS RLEQGSRSGF  360
VYGPFHPARA RKQELDVANK SRQKERAEDW ESLSASFQLQ YRNEGAILKE P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A2e-37562683223Transcription factor E2F8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682371.10.0E2F transcription factor-like E2FE
RefseqXP_025795108.10.0E2F transcription factor-like E2FE
TrEMBLA0A2S3GT590.0A0A2S3GT59_9POAL; Uncharacterized protein
STRINGSi019635m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884