PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02227.1.g00110.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 270aa MW: 29694.1 Da PI: 5.6878

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02227.1.g00110.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	29.6	1.5e-09	234	258	2	26
G2-like 2 prlrWtpeLHerFveaveqLGGsek 26 r++W+peLH+ F++a++qLGG++ Zmw_sc02227.1.g00110.1.sm.mk 234 LRRCWSPELHRLFLQALQQLGGAQG 258 69********************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-6	231	257	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MGMDPPPPQP PSLHADAAGD RRRCREYLLA LEEERRKIQV FQRELPLCLD LVTQTIERIK 60 LEMDGVGSEE TVSDRGPVLE EFMPLKPSLS LSSSEEHDSA RDTSGGVGKE AEAADTPPEM 120 KKATPDWLQS VRLWSQEPQH QRTTSSSHKE LPCKPVALNA RKAGGAFQPF EKEKRVEMPA 180 SSTTAAASST VAGDSGDKAV ASMDTEKHSS DDKETTNKDG TGKDKEGQSP SRKLRRCWSP 240 ELHRLFLQAL QQLGGAQGWY PSHPAPDRAD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate. {ECO:0000269\|PubMed:23324170}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004954868.3	1e-102	transcription factor NIGT1
Swissprot	Q6Z869	1e-84	NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBL	A0A0A9G3F3	1e-106	A0A0A9G3F3_ARUDO; Uncharacterized protein
STRING	Si019945m	1e-103	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6470	37	54

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sawaki N, et al. A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice. Plant Cell Physiol., 2013. 54(4): p. 506-17 [PMID:23324170]