PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02219.1.g00180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 266aa MW: 28015.5 Da PI: 10.0923 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.2 | 3.8e-20 | 80 | 134 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee+F+ +++++ ++++ LA++lgL rqV vWFqNrRa+ k Zmw_sc02219.1.g00180.1.sm.mk 80 RKKLRLSKDQAAVLEECFKTHHTLTPKQKAALANSLGLRPRQVEVWFQNRRARTK 134 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 124 | 6.9e-40 | 80 | 169 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk+rlsk+q+++LEe+F+++++L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL Zmw_sc02219.1.g00180.1.sm.mk 80 RKKLRLSKDQAAVLEECFKTHHTLTPKQKAALANSLGLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCERLAEENRRLG 160 69******************************************************************************* PP HD-ZIP_I/II 82 keveeLreel 91 ke +eLr +l Zmw_sc02219.1.g00180.1.sm.mk 161 KELAELR-AL 169 ******9.44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.714 | 76 | 136 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.3E-18 | 78 | 144 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.6E-17 | 78 | 140 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-19 | 80 | 134 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.4E-17 | 80 | 134 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.80E-17 | 80 | 137 | No hit | No description |
PRINTS | PR00031 | 1.0E-5 | 107 | 116 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 111 | 134 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.0E-5 | 116 | 132 | IPR000047 | Helix-turn-helix motif |
SMART | SM00340 | 5.7E-19 | 136 | 179 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 7.2E-10 | 136 | 169 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MVPQSLDLGL SLGLGPAASQ PASFRNYSGN NAVAVPDHQE ERTRCSPAGS PVSSGSGKRA 60 AEIRSAGSSG DEDDVDGAAR KKLRLSKDQA AVLEECFKTH HTLTPKQKAA LANSLGLRPR 120 QVEVWFQNRR ARTKLKQTEV DCEHLKRWCE RLAEENRRLG KELAELRALN AASPPAPPLT 180 TLSMCLSCRR VASSSSTSSP SNATTDVLAA HPHGHAAANT AGNGITSPAA AAMPGHRQFF 240 CGFREAGPSA AYAASSGLAK AVKAAR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 136 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812705.1 | 3e-97 | homeobox-leucine zipper protein HOX28-like | ||||
Swissprot | A2Y931 | 2e-66 | HOX28_ORYSI; Homeobox-leucine zipper protein HOX28 | ||||
Swissprot | Q5VPE5 | 2e-66 | HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28 | ||||
TrEMBL | A0A2S3HLY5 | 6e-96 | A0A2S3HLY5_9POAL; Uncharacterized protein | ||||
STRING | Si007082m | 3e-94 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3842 | 33 | 76 |
Publications ? help Back to Top | |||
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