PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02219.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 316aa MW: 33862.1 Da PI: 9.4475

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02219.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37	5.8e-12	164	193	27	56
HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56 +++ LA++lgL rqV vWFqNrRa+ k Zmw_sc02219.1.g00130.1.sm.mk 164 SKQKVALANRLGLRPRQVEVWFQNRRARTK 193 678999**********************98 PP
2	HD-ZIP_I/II	92	6.7e-30	164	229	26	92
HD-ZIP_I/II 26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +++Kv+la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rLeke ++Lr +lk Zmw_sc02219.1.g00130.1.sm.mk 164 SKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLR-KLK 229 79************************************************************9.665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.928	115	195	IPR001356	Homeobox domain
SMART	SM00389	4.3E-11	117	199	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.72E-12	118	203	IPR009057	Homeodomain-like
CDD	cd00086	8.71E-12	119	196	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.9E-16	119	198	IPR009057	Homeodomain-like
Pfam	PF00046	2.2E-9	164	193	IPR001356	Homeobox domain
PRINTS	PR00031	4.6E-5	166	175	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	170	193	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.6E-5	175	191	IPR000047	Helix-turn-helix motif
SMART	SM00340	7.5E-19	195	238	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	8.2E-9	195	229	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MMPQQSLDLG LSLGGLASQG SLSSSTTSGQ LSPWAAALNS VVGDARREPQ RHAAADPAGH 60 HGTTMRASTS PDHSVLSSDD SGSNKRDREE LERTGSGGVV RGAAAGSDEE DGADGAGGRK 120 KLRLSKDQAA VLEECFKSHS TLNPVRIFSL LVAVADVLSP FVGSKQKVAL ANRLGLRPRQ 180 VEVWFQNRRA RTKLKQTEVD CEYLKRWCER LADENKRLEK ELADLRKLKA APPQATGAMQ 240 PSSATLTMCP SCRRVATTAS NPQQQQQQCH PKSNVLTTAG NVLPSHCQFF PAAAVDRAGQ 300 STWNAAAAPL VTRELF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	187	195	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811981.1	1e-116	homeobox-leucine zipper protein HOX2-like
Swissprot	Q5VPE3	8e-89	HOX2_ORYSJ; Homeobox-leucine zipper protein HOX2
Swissprot	Q84U86	8e-89	HOX2_ORYSI; Homeobox-leucine zipper protein HOX2
TrEMBL	A0A3L6S0Z1	1e-119	A0A3L6S0Z1_PANMI; Homeobox-leucine zipper protein HOX2-like
STRING	Pavir.J26517.1.p	1e-115	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3842	33	76

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]