PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02209.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 503aa    MW: 53354.8 Da    PI: 6.9331
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02209.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.91e-07163211955
                           AP2   9 dkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Zmw_sc02209.1.g00040.1.sm.mk 163 HRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 211
                                   789**********77776664346655.77******************98 PP
2AP247.93.3e-15256305355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  Zmw_sc02209.1.g00040.1.sm.mk 256 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 305
                                   9***************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.618144219IPR001471AP2/ERF domain
SMARTSM003801.2E-13153225IPR001471AP2/ERF domain
CDDcd000187.47E-13163219No hitNo description
Gene3DG3DSA:3.30.730.106.9E-9163220IPR001471AP2/ERF domain
PfamPF008473.1E-5163211IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-10163220IPR016177DNA-binding domain
SuperFamilySSF541711.05E-17254314IPR016177DNA-binding domain
CDDcd000189.15E-24254315No hitNo description
Gene3DG3DSA:3.30.730.103.1E-18255313IPR001471AP2/ERF domain
SMARTSM003802.9E-33255319IPR001471AP2/ERF domain
PROSITE profilePS5103219.19255313IPR001471AP2/ERF domain
PfamPF008476.8E-10256305IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MTNTNNGGNS GGGSANNGGT NAAASGWLGF SLSPHMASSM DDHHHHHHDV QQQQHNHHHG  60
IFFPSVAAAY GLGGAGDAAV ATSGPYYAPQ LASMPLKSDG SLCIMEALRR TDQDHHGPKL  120
EDFLGAAQSQ AMALSLDNGS SFYHYGGVGV GHHHGGLLQP DAHRWTGRYE AHLWDNSCKK  180
EGQTRKGRQG GYDMEEKAAR AYDLAALKYW GPSTHINFPL EDYQEELEEM KNMTRQEYVA  240
HLRRKSSGFS RGASMYRGVT RHHQHGRWQA RIGRVSGNKD LYLGTFSTQE EAAEAYDIAA  300
IKFRGLNAVT NFDITRYDVD KIMASNTLLP GDLARRKKDD EVLVAAASDG GASAALVQGG  360
GSDAADAWKI AAAMTSAAPR ICDQHGQGHD VLSGEAFSVL HDLVVTAADG HSNTTNNGGG  420
AHCMPMSSAS SLVTSLSNSR EGSPDRGGGL SMLFSKPSPS PSQAAPKPTS PLPLGSWASP  480
ASSRPGAAVS IAHLPLFAAW TDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803955.11e-169AP2-like ethylene-responsive transcription factor CRL5
SwissprotQ84Z021e-165CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0E0LGN00.0A0A0E0LGN0_ORYPU; Uncharacterized protein
STRINGOPUNC07G01740.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]