PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02201.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 586aa MW: 62414.6 Da PI: 9.4734

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02201.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.8	9.2e-39	311	407	3	95
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssss 81 ++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tgt++++as++ +++s+sss Zmw_sc02201.1.g00090.1.am.mk 311 VRKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIVAATGTGTTPASFSttSPSSRSSS 391 689************************************************************999998888888888888 PP TCP 82 asnsssg..kaaksaa 95 +++++++ +aa++++ Zmw_sc02201.1.g00090.1.am.mk 392 QQAPQIQlpSAAPAHH 407 8888887553333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.50.140	1.2E-32	97	203	IPR012340	Nucleic acid-binding, OB-fold
SuperFamily	SSF50249	2.4E-20	99	202	IPR012340	Nucleic acid-binding, OB-fold
CDD	cd04478	7.01E-21	130	202	No hit	No description
PROSITE profile	PS51369	27.838	316	370	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.2E-32	316	395	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence Send to blast
MFGALLSSAP AFSYFTTPLQ IPVPHFSPPI HHPVLDPSPD PPPEEEQAAA AAMMFSSQPD 60 NFSPSQINSS QNDSITPSKV PSISRLHSIL LRSPIPSTMP LTVKQIADAH QSGTGDKGAP 120 FIVDGVETAN VRLVGMVNGK AERTTDVSFT LDDGTGRLDF IRWVNDAADS TETAAIQNGM 180 YVSVIGSLKG LQERKRATAF AISEEEVGCI QRNASLLISR IHGFSSFTAR QQEKMPAQRT 240 GRTGSNGSRA GGRSDPIRSG MLPAARVSVS PPFPTRPHPV SQDRAPMTTR PADGGGGDKQ 300 LVPASNNAHG VRKAPSKDRH SKVDGRGRRI RMPIICAARV FQLTRELGHK SDGQTIEWLL 360 RQAEPSIVAA TGTGTTPASF STTSPSSRSS SQQAPQIQLP SAAPAHHVLP HAAAAAAPFI 420 LGKRVRGAND DTEVTAVGPA AGFWALPARA DFGQLWSFAA APDMMVAAVP EEASAARYLP 480 VAQAQGNLNL LASFSGGPAG NGATAARAEE ESAHEFFCRS LIVLYVSLAF THVNQERDWM 540 EPLLLAVLFP IPASKKRLRK NPHSFTPFYC THGAVNHVCN CTIRPP

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence Send to blast

MFGALLSSAP AFSYFTTPLQ IPVPHFSPPI HHPVLDPSPD PPPEEEQAAA AAMMFSSQPD  60
NFSPSQINSS QNDSITPSKV PSISRLHSIL LRSPIPSTMP LTVKQIADAH QSGTGDKGAP  120
FIVDGVETAN VRLVGMVNGK AERTTDVSFT LDDGTGRLDF IRWVNDAADS TETAAIQNGM  180
YVSVIGSLKG LQERKRATAF AISEEEVGCI QRNASLLISR IHGFSSFTAR QQEKMPAQRT  240
GRTGSNGSRA GGRSDPIRSG MLPAARVSVS PPFPTRPHPV SQDRAPMTTR PADGGGGDKQ  300
LVPASNNAHG VRKAPSKDRH SKVDGRGRRI RMPIICAARV FQLTRELGHK SDGQTIEWLL  360
RQAEPSIVAA TGTGTTPASF STTSPSSRSS SQQAPQIQLP SAAPAHHVLP HAAAAAAPFI  420
LGKRVRGAND DTEVTAVGPA AGFWALPARA DFGQLWSFAA APDMMVAAVP EEASAARYLP  480
VAQAQGNLNL LASFSGGPAG NGATAARAEE ESAHEFFCRS LIVLYVSLAF THVNQERDWM  540
EPLLLAVLFP IPASKKRLRK NPHSFTPFYC THGAVNHVCN CTIRPP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4gnx_B	5e-11	100	199	11	108	Putative uncharacterized protein
4gnx_Y	5e-11	100	199	11	108	Putative uncharacterized protein
4gop_B	5e-11	100	199	11	108	Putative uncharacterized protein
4gop_Y	5e-11	100	199	11	108	Putative uncharacterized protein

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download