PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02195.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 269aa    MW: 29522.9 Da    PI: 9.7515
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02195.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.3e-161562148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g W++eEd++l d++ ++G g+W++++++ g+ R +k+c++rw ++l
  Zmw_sc02195.1.g00080.1.am.mk 15 KGLWSPEEDQRLRDYILKHGLGCWSAVPAKAGLQRNGKSCRLRWINHL 62
                                  678******************************************996 PP
2Myb_DNA-binding29.61.6e-0970942348
                                  -HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                                  +W+ Ia +++ gRt++++k++w++yl
  Zmw_sc02195.1.g00080.1.am.mk 70 RWSQIAMHLP-GRTDNEVKNYWNSYL 94
                                  5*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.5381066IPR017930Myb domain
SMARTSM007171.4E-151496IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-201464IPR009057Homeodomain-like
SuperFamilySSF466892.29E-231595IPR009057Homeodomain-like
PfamPF002496.5E-141562IPR001005SANT/Myb domain
CDDcd001678.16E-111894No hitNo description
PROSITE profilePS500907.1556594IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.7E-127095IPR009057Homeodomain-like
PfamPF002492.4E-77094IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGCRSCEKPK MNYRKGLWSP EEDQRLRDYI LKHGLGCWSA VPAKAGLQRN GKSCRLRWIN  60
HLRPGLKHFR WSQIAMHLPG RTDNEVKNYW NSYLKKRVMQ AQGSNPKSPP ELTSLSTTEP  120
SIHHHVKNSS GTTTTSHDHD ANISKGGNHH AMLSAPAPVA HPPFNHRVTR QQPKNFIFSD  180
WASYSVSTHW PATRTSSGNV APLHAGGAFG DQMSGSYGEL PPQHQDHQGA TAHGAAANNG  240
IAGSGYFDLL NVGDICGGGF SSTNDDLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-1699823128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802030.11e-141transcription factor MYB10-like
SwissprotQ8LPH63e-38MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A2S3GKS61e-140A0A2S3GKS6_9POAL; Uncharacterized protein
TrEMBLA0A2T7F0V61e-140A0A2T7F0V6_9POAL; Uncharacterized protein
STRINGPavir.Aa03518.1.p1e-140(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122962735