PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02186.1.g00190.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 921aa    MW: 99216 Da    PI: 10.939
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02186.1.g00190.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.87.3e-19839873135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Zmw_sc02186.1.g00190.1.am.mk 839 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 873
                                   *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.295833869IPR000679Zinc finger, GATA-type
SMARTSM004012.1E-18833887IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-14836896No hitNo description
Gene3DG3DSA:3.30.50.105.1E-15837871IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.68E-13838895No hitNo description
PfamPF003207.6E-17839873IPR000679Zinc finger, GATA-type
PROSITE patternPS003440839864IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 921 aa     Download sequence    Send to blast
MSQQFRQIAV FERPLSVLGT FIASATNTAE NVRVRTCQGL LALFLQGFLQ VLRGVHAIRV  60
PFGSRSLGPT LKMNNGAAPT GMSVRAHRHL RRDRTICVVW VRRSESSARG TITARPVPVR  120
GEQHPDLAGA RRLEPREHLD GQRIDDGQGI DDTVEPLGGC SAPFLETAHH RHGVVPLPPR  180
LDPSRQQRHG HAASHRHRAP RRHVQSLPTP HRSLLPAHEM GSSPLAAATE NRSLGIDANA  240
PRPLASRDML VHPSRWMWMR RCFPLFEVQT TIPAPSSRVT PLALETAAGW GAGGGIDEVR  300
NCAVTACRGG DIIRQRRWLN KRRRLPGKAK TTPSPSLHGD YVKTALEETE EPQLCPFLGL  360
NVGRQQGQGA VPPSLVGAAV LVTSLAGPGQ IRRHNAQARA RECRQDWCQV AHHAKASTRA  420
ASGDLSLPGM VSREVDSVRH QRLTPATRRA LPAPQRQRIN RTRHPARGAT SSARPMTPSA  480
RAHATNRAAN RRSEDAPAGK VPRQNNLRNG TRSSLPPLLP TSSLPPAPFH PLLLYVRLLQ  540
PCSSAAALAM ALFLAHHHGS LVETEGRMGA LRSSLLPCQV AEEVAAAGAA GPAAWCAGER  600
GVGLFAEGFS VEDLLDLEEL CEVDKDVAAE LGEAAPSSAV EEDKSSDSHG SSSVVSYELM  660
PLPPPVIDLP AHDAEELEWV SRIMDDSLAE LPPASSFALR RQQEPAVSRM VPVPMPTICA  720
LSTEALVPVK AKRSKRSRGS VWSLSGAAPL SDSTSSSSTT TTSSCSSSSA SFPPLLLLDS  780
SPFAAAHLLE QAPRSKKSKH GKNGKSKLKK RGRKPKHQQP SQFSGADATA PVASGDRRCS  840
HCGVQKTPQW RAGPEGAKTL CNACGVRYKS GRLLPEYRPA CSPTFVSSIH SNSHRKVLEM  900
RRKKEGLPLV PAASTPAVTS F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320324KRRRL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108