PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02186.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 229aa MW: 25671.4 Da PI: 4.9454

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02186.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58	1.6e-18	44	97	4	56
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le+ F+ ++ +e++eLA++lgL+ rqV +WFqN+Ra+++ Zmw_sc02186.1.g00030.1.sm.mkhc 44 KRRFTEEQVRSLETTFHArRAKLEPKEKAELARELGLQPRQVAIWFQNKRARWR 97 458************8899******************************9 PP
2	HD-ZIP_I/II	121.9	3.2e-39	42	135	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeene 78 e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+ L++++dal+++ e Zmw_sc02186.1.g00030.1.sm.mkhc 42 ERKRRFTEEQVRSLETTFHARRaKLEPKEKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYADLRARCDALRDRVE 120 69***************9999**************************************************** PP HD-ZIP_I/II 79 rLekeveeLreelke 93 +L +e+++L+++l++ Zmw_sc02186.1.g00030.1.sm.mkhc 121 ALAQEKAALAAQLDD 135 ********99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.31E-17	32	101	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.232	38	99	IPR001356	Homeobox domain
SMART	SM00389	2.5E-17	41	103	IPR001356	Homeobox domain
CDD	cd00086	1.17E-16	43	100	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.6E-19	44	105	IPR009057	Homeodomain-like
Pfam	PF00046	6.5E-16	44	97	IPR001356	Homeobox domain
PRINTS	PR00031	5.3E-7	70	79	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	74	97	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.3E-7	79	95	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.1E-11	99	138	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MERDCQFLAP PHQYEDQLLH QLMMVGDQDP AGAAGVRTGG GERKRRFTEE QVRSLETTFH 60 ARRAKLEPKE KAELARELGL QPRQVAIWFQ NKRARWRSKQ LEHDYADLRA RCDALRDRVE 120 ALAQEKAALA AQLDDLKLKG RLNERRDQSG SCDVDNGGTT FEVDDKRKNN SNSVSSPDDG 180 AVAPAVATSE DSTAGGYYDD VAYAGLSDPF CNPPELWDAW PLLEWNAVA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: In leaves by drought stress. {ECO:0000269\|PubMed:17999151}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001151825.1	1e-94	homeobox-leucine zipper protein ATHB-6
Swissprot	A2X7U1	2e-74	HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBL	A0A1D6HER1	2e-93	A0A1D6HER1_MAIZE; Homeobox-leucine zipper protein ATHB-6
STRING	GRMZM2G117164_P01	3e-94	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4027	31	75