PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02184.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 538aa    MW: 57907.1 Da    PI: 9.2729
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02184.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.72.6e-15463488126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   +ktelC+ + +tG C+yGd+C+FaHg
  Zmw_sc02184.1.g00040.1.am.mk 463 FKTELCNKWEETGACPYGDQCQFAHG 488
                                   79***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-18457495IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-10459494IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601462490IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-10462489IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-12463488IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-10496526IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-7497526IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338500528IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4500527IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MIAVALARAL VGSQCARWCG VTGKEGNRGG SAIELGSAEN DWDDGPVKPK QARPTRLGSS  60
ISEVPAYLFA LRAYPYVTNH VRLARTQAKK LSGAGVQAQP ASQQLPTTDW STARCTKDDD  120
EPPPRSGSPV VRPAHSPAVL ALADTRAPRV SPAMDMLPGR PGYINHDAAR SPARTHRTGP  180
SSPTQISGSS SAPRTSALRS GRCGLLSSSS DAAMQEALIS PANADRLRSA LELKSFAFGD  240
QRLSSPRHFG DDALFRCSSP FSPSFGFSSP SPHATSVSLS PSSSASLVDD GDDAAAGDVT  300
GHRLQLARLA LQYQEAADRY ELCVARLAEA ADEAAALRRE NAQLRVANCD LASRLALLSG  360
KQTAPAAIAE EIRRLRHVEQ NQNAVPAAAE RAPEKLTDYL KMNKAPVTPV ANNRRPRASN  420
PTVNNHSSQR LYVDANSGMK GEKSKEQRSA GGMELEVYNQ GMFKTELCNK WEETGACPYG  480
DQCQFAHGVA ELRPVIRHPR YKTQVCRMVL AGEPCPYGHR CHFRHTLTPA ERLLLPRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-21463525466Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569444.21e-132zinc finger CCCH domain-containing protein 9 isoform X1
RefseqXP_020154780.11e-132zinc finger CCCH domain-containing protein 9-like isoform X1
SwissprotA2ZVY51e-107C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A287L6P61e-132A0A287L6P6_HORVV; Uncharacterized protein
TrEMBLA0A3B6EIL51e-132A0A3B6EIL5_WHEAT; Uncharacterized protein
TrEMBLA0A446NIW51e-132A0A446NIW5_TRITD; Uncharacterized protein
STRINGMLOC_5666.31e-133(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784