PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02181.1.g00140.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 383aa MW: 41683.8 Da PI: 6.3621

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02181.1.g00140.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	295	314	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Zmw_sc02181.1.g00140.1.am.mk 295 FSCPVCLKTFNRYNNMQMHM 314 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.66	295	322	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	8.2E-6	295	314	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	297	317	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
LSPRSRSPSL SVFRSLVAYN YPLPTTAPHP EASSQEQKQS CRESECSLQQ ETCPHPTYSL 60 ASMEDPYTSF FKNPYYYYAS SFPAPPAAHH LPPSLPTTYT ALYPTVAAAA PPHYSAFFQP 120 PTTTLPRLDD SSPPSPPLRE ALPLLSLSPT RSRPNVEADS DSDDDADDFV QRGSSGPHAA 180 RAPLFADLNC VPACCDGDPM DVEATDDAAV ALHIGLPAAP GNGGAETDLL SGLSGRAGGA 240 CMEPEEDEEC KVDTGAGDSD ELVPLGFAST PMGRLNKGQY WIPTPAQILI GPTQFSCPVC 300 LKTFNRYNNM QMHMWGHGSQ YRKGPESLRG VQPTAMLRLP CYCCAPGCRN NIDHPRARPL 360 KDFRTLQTHY KRKHGLKPFL CRK

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

LSPRSRSPSL SVFRSLVAYN YPLPTTAPHP EASSQEQKQS CRESECSLQQ ETCPHPTYSL  60
ASMEDPYTSF FKNPYYYYAS SFPAPPAAHH LPPSLPTTYT ALYPTVAAAA PPHYSAFFQP  120
PTTTLPRLDD SSPPSPPLRE ALPLLSLSPT RSRPNVEADS DSDDDADDFV QRGSSGPHAA  180
RAPLFADLNC VPACCDGDPM DVEATDDAAV ALHIGLPAAP GNGGAETDLL SGLSGRAGGA  240
CMEPEEDEEC KVDTGAGDSD ELVPLGFAST PMGRLNKGQY WIPTPAQILI GPTQFSCPVC  300
LKTFNRYNNM QMHMWGHGSQ YRKGPESLRG VQPTAMLRLP CYCCAPGCRN NIDHPRARPL  360
KDFRTLQTHY KRKHGLKPFL CRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973849.1	1e-162	zinc finger protein WIP2
TrEMBL	K3YHV0	1e-160	K3YHV0_SETIT; Uncharacterized protein
STRING	Si013819m	1e-161	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170