PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02178.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 854aa    MW: 92912.6 Da    PI: 6.4679
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02178.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-182683457
                                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                      ++t+eq+e+Le+++ ++++ps  +r+++ +++    +++ +q+kvWFqNrR +ek+
  Zmw_sc02178.1.g00030.1.am.mkhc 26 YVRYTPEQVEALERVYSECPKPSSLRRQQIIRECpilsNIEPKQIKVWFQNRRCREKQ 83
                                    6789****************************************************97 PP
2START175.23.9e-551743812204
                                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEE CS
                           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakae 80 
                                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ ++
  Zmw_sc02178.1.g00030.1.am.mkhc 174 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVD 251
                                     68999*****************************************************.8888888888********** PP

                                     EEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEE CS
                           START  81 tlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgil 153
                                     +l vi +g  g+++l++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   ++++vRae+lpSg+l
  Zmw_sc02178.1.g00030.1.am.mkhc 252 VLHVIPTGngGTIELIYMQTYAPTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFVRAEVLPSGYL 330
                                     **************************999****************************9999999*************** PP

                                     EEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                           START 154 iepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                                     i+p+++g+s +++v+hvdl++++++++lr+l++s  + ++kt+ a+l++ +
  Zmw_sc02178.1.g00030.1.am.mkhc 331 IRPCEGGGSMIHIVDHVDLDAWSVPEVLRPLYESPKMLAQKTTIAALRHIR 381
                                     **********************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-181183IPR009057Homeodomain-like
PROSITE profilePS5007115.2562084IPR001356Homeobox domain
SMARTSM003893.8E-152288IPR001356Homeobox domain
SuperFamilySSF466891.37E-162487IPR009057Homeodomain-like
CDDcd000864.90E-162585No hitNo description
PfamPF000465.4E-162683IPR001356Homeobox domain
CDDcd146861.81E-677116No hitNo description
PROSITE profilePS5084827.078164364IPR002913START domain
CDDcd088756.91E-70168384No hitNo description
Gene3DG3DSA:3.30.530.201.6E-24172356IPR023393START-like domain
SMARTSM002342.9E-47173383IPR002913START domain
SuperFamilySSF559617.14E-39174384No hitNo description
PfamPF018527.0E-53174381IPR002913START domain
PfamPF086701.3E-50711853IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MVAAGGGKDR SSPGGGGAPQ VDTGKYVRYT PEQVEALERV YSECPKPSSL RRQQIIRECP  60
ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSRLVY  120
ENGYMKQQLH NPSVATTDTS CESVVTSGQH HQQQNSAAPR PPRDANNPAG LLAIAEETLA  180
EFLSKATGTA VDWVQMVGMK PGPDSIGIIA VSHNCSGVAA RACGLVSLEP TKVAEILKDR  240
PSWYRDCRCV DVLHVIPTGN GGTIELIYMQ TYAPTTLAAP RDFWTLRYTS GLEDGSLVIC  300
ERSLTQSTGG PSGPNTPNFV RAEVLPSGYL IRPCEGGGSM IHIVDHVDLD AWSVPEVLRP  360
LYESPKMLAQ KTTIAALRHI RQIAHESSGE MPYVGGRQPA VLRTFSQRLS RGFNDAVNGF  420
PDDGWSLLSS DGAEDVTIAI NSFPNKLVGS HVNSSHLFSA IGGGILCAKA SMLLQNVPPA  480
LLVRFLREHR SEWADPGVDA YSAAALRASP YAVPGLQASG FMGSQVILPL SHTLEHEELQ  540
FLEVIRLEGH SFCHDEVVLS RDMYLLQLCS GVDENAAGAC AQLVFAPIDE SFADDAPLLP  600
SGFCVIPLDA KTDPPSGTRT LDLAASLEVG SGGTTRASSD ASSTSNTRSV LTIAFQFSYE  660
NHLRESIAAM ARQYVRTVVA SVQRVAMAIA PSRLGGQLEV KQTPGSPEAQ TLARWIGRSY  720
RFHTGAELLR TETQCTDSSL KALWQHSDSI MCCSLKAAPV FTFANQAGLD MLETTLIALQ  780
DIPLEKILDD DGRKALCSEH PKLMQQGFAY LPGGVCVSSM GRPVSYEQAV AWKVLSDDDT  840
PHCLAFMFVN WSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982339.10.0homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLK4A5S40.0K4A5S4_SETIT; Uncharacterized protein
STRINGSi034228m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]