PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02174.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 493aa MW: 52395.3 Da PI: 6.5391

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02174.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.6e-06	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H Zmw_sc02174.1.g00080.1.am.mk 82 FVCEICGKGFQRDQNLQLHRRGH 104 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.15E-5	80	105	No hit	No description
PROSITE profile	PS50157	11.614	82	104	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.4E-5	82	104	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	84	104	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MFHHQLPLQD QAEAAHQDGG MSNLTSSASG PNNNPPPAPP PPPPAPAASA GNKRKRSLPG 60 NPDPDAEVIA LSPATLMATN RFVCEICGKG FQRDQNLQLH RRGHNLPWKL KQRGTGKEAA 120 RKKVYVCPEA SCASFSFGFV LAMAEEDSEA DPLTCTAAQH AMEREARKEE NKQQSCGGVG 180 QGKEILDDEE LESLEGEAPR ALYFYLRVDN TTHTAQRSVG RRRDSFITHR AFCDALTEES 240 AKAIGLNAMH AAAPAVLFSP PQPTSQVMQQ HQELAAFQEH HNHQEVLQPL PQQQVPAAQQ 300 QHCNYAMKTE MLPWPMMPYD QHAHPLLQPL CNAAAQSSAT SAPLPSAHLS ATALLQKAVE 360 MGATISTAGG GGAHYTQMAG AARSAPGSAT FGLGLPGLNG QQVDTAVGGL VRSASHGRSG 420 EDGASGGGAS DGMTRDFLGL RAFSRGDILS LAGFDSCIGA VNANTSVSCY EPHEHAQQQQ 480 SNNDPWHGMG SHS

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MFHHQLPLQD QAEAAHQDGG MSNLTSSASG PNNNPPPAPP PPPPAPAASA GNKRKRSLPG  60
NPDPDAEVIA LSPATLMATN RFVCEICGKG FQRDQNLQLH RRGHNLPWKL KQRGTGKEAA  120
RKKVYVCPEA SCASFSFGFV LAMAEEDSEA DPLTCTAAQH AMEREARKEE NKQQSCGGVG  180
QGKEILDDEE LESLEGEAPR ALYFYLRVDN TTHTAQRSVG RRRDSFITHR AFCDALTEES  240
AKAIGLNAMH AAAPAVLFSP PQPTSQVMQQ HQELAAFQEH HNHQEVLQPL PQQQVPAAQQ  300
QHCNYAMKTE MLPWPMMPYD QHAHPLLQPL CNAAAQSSAT SAPLPSAHLS ATALLQKAVE  360
MGATISTAGG GGAHYTQMAG AARSAPGSAT FGLGLPGLNG QQVDTAVGGL VRSASHGRSG  420
EDGASGGGAS DGMTRDFLGL RAFSRGDILS LAGFDSCIGA VNANTSVSCY EPHEHAQQQQ  480
SNNDPWHGMG SHS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969529.1	1e-154	protein indeterminate-domain 7
TrEMBL	K3XHB6	1e-153	K3XHB6_SETIT; Uncharacterized protein
STRING	Si001287m	1e-153	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320