PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02172.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bZIP | ||||||||
Protein Properties | Length: 199aa MW: 21154.1 Da PI: 8.6589 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30 | 1.2e-09 | 38 | 82 | 8 | 52 |
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 +r + NR A r++R++Kka ++ Lee+v L a N++L k+l++ Zmw_sc02172.1.g00050.1.es.mkhc 38 KRPAGNRAAVRKYREKKKAHTASLEEEVVHLRALNQQLMKKLQNH 82 78889**********************************999874 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.1E-13 | 29 | 99 | No hit | No description |
SMART | SM00338 | 7.6E-10 | 29 | 98 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 1.0E-14 | 36 | 88 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.5E-8 | 36 | 82 | No hit | No description |
CDD | cd14686 | 8.22E-12 | 37 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
ADQSHTHTCV HVHTKILAAS PEGAETAESP SENNGSKKRP AGNRAAVRKY REKKKAHTAS 60 LEEEVVHLRA LNQQLMKKLQ NHAALEAEVA RLRCLLVDIR GRIEGEIGAF PYQRPPSVDH 120 GSFLGGAQVA NSCDFRCSDQ MYCNPGLQGP IGGQVLGPAA CDIANIKCMG SAKSGSTKRP 180 VCGGMDAMPA GCLPSADKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966469.1 | 1e-124 | basic leucine zipper 23 | ||||
Swissprot | Q8VY76 | 2e-54 | BZP19_ARATH; Basic leucine zipper 19 | ||||
TrEMBL | K3XYU9 | 1e-123 | K3XYU9_SETIT; Uncharacterized protein | ||||
STRING | Si007107m | 1e-123 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4175 | 35 | 72 |
Publications ? help Back to Top | |||
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