PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02166.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 861aa MW: 92270.8 Da PI: 10.5793

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02166.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170	7.5e-53	481	609	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ew+fFs+rd+ky++g r+nra++sg Zmw_sc02166.1.g00160.1.am.mk 481 LPPGFRFHPTDEELVVHYLKKKAASMPLPV-TIIAEVDLYKFDPWELPAKASFGEHEWFFFSPRDRKYPNGARPNRAATSG 560 79**************************.89***********9989999********************** PP NAM 82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatg+dk+++++ ++e+vg+kk Lvfy+g+ pkg kt+W+mheyrl Zmw_sc02166.1.g00160.1.am.mk 561 YWKATGTDKPIFASggSREKVGVKKALVFYRGKPPKGIKTNWIMHEYRL 609 *********9777788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-62	477	648	IPR003441	NAC domain
PROSITE profile	PS51005	61.295	481	648	IPR003441	NAC domain
Pfam	PF02365	6.2E-27	482	609	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 861 aa Download sequence Send to blast
MAGLTDVLIL ATGLVIYRTP ATELQKFLAP TVFPRPHQPS VRTAGLFSRL VLVAAQTRDR 60 NHSRFESTVS LSSAAAAAAF LCRLDQRTHL TRAPRSGCMD AVRHPLHERA RARSKRLTNR 120 ATRHGSTATK SPGLLGTGRR RAARPPRSRW SRARELDRFL NYGGAVVNRA RGEAATQLRS 180 FGAAEPQNFP FRSGPYQHPT CMAMSPVWFC SWVACVYLGG SKTSAADRPS KCASSPTLLH 240 LGQPHAPQHC LGHPQGRSSV GFELPTRLRL TLDRIQLSAP CACYRLPMPV ATSPVSYRCW 300 ASVPSDQRSR RTLLLEPAAA PCLSAQGGPS MESPDGRRIR GSFFCRRRLK QGIRATAAGR 360 AGDKCATVRG ALGRGRWLPD TPYGGSLRTC RAARGPDRLA TCLLASVSGW LSFIGGAKGP 420 ETSTKNPSTD HSPACAALPL LLTDTATNLG LFARTRSTES TDSSSGSAPP QRKQPGPAPH 480 LPPGFRFHPT DEELVVHYLK KKAASMPLPV TIIAEVDLYK FDPWELPAKA SFGEHEWFFF 540 SPRDRKYPNG ARPNRAATSG YWKATGTDKP IFASGGSREK VGVKKALVFY RGKPPKGIKT 600 NWIMHEYRLA DAASSVNTSR PPPGSGGGGK AAASLRLDDW VLCRIYKKVN KYGVGEHLQR 660 SMDGGEDCVE DAVGAYRLSH AATGDMAIAS GGENYTKLLH HNGNNFLDGL LIVDDGSLTA 720 GASSLNHLAA VATASPAVTK QLLAPPGSTP FNWLDTSAKA ILPPAKTCHG FSRDTTDGGT 780 SSLSSPAERN HLAVPGSSAG DIGASSGGAV AVPTLLNPFR MQQGAAYLHH HASFLGTSMP 840 PETTSCAFQN PYQPAGVNWN P

Sequence ? help Back to Top

Protein Sequence Length: 861 aa Download sequence Send to blast

MAGLTDVLIL ATGLVIYRTP ATELQKFLAP TVFPRPHQPS VRTAGLFSRL VLVAAQTRDR  60
NHSRFESTVS LSSAAAAAAF LCRLDQRTHL TRAPRSGCMD AVRHPLHERA RARSKRLTNR  120
ATRHGSTATK SPGLLGTGRR RAARPPRSRW SRARELDRFL NYGGAVVNRA RGEAATQLRS  180
FGAAEPQNFP FRSGPYQHPT CMAMSPVWFC SWVACVYLGG SKTSAADRPS KCASSPTLLH  240
LGQPHAPQHC LGHPQGRSSV GFELPTRLRL TLDRIQLSAP CACYRLPMPV ATSPVSYRCW  300
ASVPSDQRSR RTLLLEPAAA PCLSAQGGPS MESPDGRRIR GSFFCRRRLK QGIRATAAGR  360
AGDKCATVRG ALGRGRWLPD TPYGGSLRTC RAARGPDRLA TCLLASVSGW LSFIGGAKGP  420
ETSTKNPSTD HSPACAALPL LLTDTATNLG LFARTRSTES TDSSSGSAPP QRKQPGPAPH  480
LPPGFRFHPT DEELVVHYLK KKAASMPLPV TIIAEVDLYK FDPWELPAKA SFGEHEWFFF  540
SPRDRKYPNG ARPNRAATSG YWKATGTDKP IFASGGSREK VGVKKALVFY RGKPPKGIKT  600
NWIMHEYRLA DAASSVNTSR PPPGSGGGGK AAASLRLDDW VLCRIYKKVN KYGVGEHLQR  660
SMDGGEDCVE DAVGAYRLSH AATGDMAIAS GGENYTKLLH HNGNNFLDGL LIVDDGSLTA  720
GASSLNHLAA VATASPAVTK QLLAPPGSTP FNWLDTSAKA ILPPAKTCHG FSRDTTDGGT  780
SSLSSPAERN HLAVPGSSAG DIGASSGGAV AVPTLLNPFR MQQGAAYLHH HASFLGTSMP  840
PETTSCAFQN PYQPAGVNWN P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-67	471	648	10	168	NAC domain-containing protein 19
3swm_B	4e-67	471	648	10	168	NAC domain-containing protein 19
3swm_C	4e-67	471	648	10	168	NAC domain-containing protein 19
3swm_D	4e-67	471	648	10	168	NAC domain-containing protein 19
3swp_A	4e-67	471	648	10	168	NAC domain-containing protein 19
3swp_B	4e-67	471	648	10	168	NAC domain-containing protein 19
3swp_C	4e-67	471	648	10	168	NAC domain-containing protein 19
3swp_D	4e-67	471	648	10	168	NAC domain-containing protein 19
3ulx_A	5e-67	480	652	14	172	Stress-induced transcription factor NAC1

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00058	PBM	Transfer from AT1G61110	Download

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7572	36	49