PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02165.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 540aa MW: 58621.3 Da PI: 9.9223

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02165.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44	4e-14	316	367	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++ + + a+i+ A++Y+++L+ Zmw_sc02165.1.g00130.1.am.mk 316 QRMTHIAVERNRRRQMNEHLAVLRSLMPPS---YAHRGDQASIVGGAINYVRELE 367 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.26E-14	314	371	No hit	No description
SuperFamily	SSF47459	4.06E-17	315	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.859	315	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.5E-14	315	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-11	316	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-10	321	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MSVTTPWPCT RSWSWTNRET GSPGPGDWHP PQPSCGAESM DLHACFDHSA VAAYKKLRPY 60 NPLQATPRSF SNLPTTPSVR GVPAHLGRWG PLSQQRTTER DHPTASQITI LRQAWATPHA 120 NTPSFYSLCK SWPGPSPKAQ NPARGCRVRV RLTRDSRLIK RGVARQPGEH AHTRRSPTRL 180 LLASRPWACS LVTHHKVSCV RVRGRLLAMA LEAVVFSQAG AGHFGYGRVD SPYAMPWCDL 240 PGATGFGFAG DWGYDGLLAS VAPDGADEWE TASAKQDQSS EASAVGKGTA EPAAAAGRRK 300 RRRAKVVKNK EEIETQRMTH IAVERNRRRQ MNEHLAVLRS LMPPSYAHRG DQASIVGGAI 360 NYVRELEQLL QSLEVQKSIK NRDAGCSCTD AAGKSPFAGF FTFPQYSTSS SHAGCAAAAT 420 SSNNTSNVAN GEAAGSGASG DRAPAVADIE VTMVEGHASL KVLVPRRPKQ LLKLVAGLQH 480 LRVPPLHLNV TSVDAMVLYT FSLKVEDDSK MGSVEDIATA VHEILSRIRR QEVEEETAVM

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MSVTTPWPCT RSWSWTNRET GSPGPGDWHP PQPSCGAESM DLHACFDHSA VAAYKKLRPY  60
NPLQATPRSF SNLPTTPSVR GVPAHLGRWG PLSQQRTTER DHPTASQITI LRQAWATPHA  120
NTPSFYSLCK SWPGPSPKAQ NPARGCRVRV RLTRDSRLIK RGVARQPGEH AHTRRSPTRL  180
LLASRPWACS LVTHHKVSCV RVRGRLLAMA LEAVVFSQAG AGHFGYGRVD SPYAMPWCDL  240
PGATGFGFAG DWGYDGLLAS VAPDGADEWE TASAKQDQSS EASAVGKGTA EPAAAAGRRK  300
RRRAKVVKNK EEIETQRMTH IAVERNRRRQ MNEHLAVLRS LMPPSYAHRG DQASIVGGAI  360
NYVRELEQLL QSLEVQKSIK NRDAGCSCTD AAGKSPFAGF FTFPQYSTSS SHAGCAAAAT  420
SSNNTSNVAN GEAAGSGASG DRAPAVADIE VTMVEGHASL KVLVPRRPKQ LLKLVAGLQH  480
LRVPPLHLNV TSVDAMVLYT FSLKVEDDSK MGSVEDIATA VHEILSRIRR QEVEEETAVM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	298	302	RKRRR
2	316	327	RMTHIAVERNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796362.1	1e-129	transcription factor bHLH94-like
TrEMBL	A0A0A9F3U9	1e-138	A0A0A9F3U9_ARUDO; Uncharacterized protein
STRING	Pavir.J40759.1.p	1e-129	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP741	38	156