PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02160.1.g00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 327aa MW: 35721.7 Da PI: 8.4814 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+++++ +G+g +W + +++ g++R++k+c++rw++yl Zmw_sc02160.1.g00110.1.sm.mk 14 KGPWSPEEDRKLKEYIHNHGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.9 | 2e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++++Ed ++ +++ G++ W+ Ia+ ++ gRt++++k++w++ Zmw_sc02160.1.g00110.1.sm.mk 69 GDFSEDEDRIICSLFTAIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 689******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.135 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.47E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.02E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.723 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 5.5E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.97E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MGRAPCCDKA SVKKGPWSPE EDRKLKEYIH NHGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPNIKHGD FSEDEDRIIC SLFTAIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMLA 120 HGLQPPTTTN TNSHHHRSKK QQQLFFSAQA EAPSSATQPP GEPLSLQYLS TPFHNFSYHY 180 GSRCYDSNTP TSHHSAGTGG SLLMLGGSND EQHMISSPCF PNYGSSHGHD SAAVAASLAM 240 ESFVFQDDHH KALQVLLASG TASLDHQNGT NTSCGYEETA KPLLVNVTAG GGGSNWVSNS 300 FFCSYSEEKS SSSPNAAGVS RQGSFMY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-26 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956269.1 | 2e-98 | myb-related protein Hv1 | ||||
TrEMBL | A0A2S3GXU5 | 1e-103 | A0A2S3GXU5_9POAL; Uncharacterized protein | ||||
STRING | Si030544m | 6e-98 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |