PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02158.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 245aa MW: 26931.6 Da PI: 6.5073

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02158.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	68	1.8e-21	22	95	5	78
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfed 78 r +P++ v+rim+++lP n+ki d+k+ +++c+sef + +t ea+ ++e r+ ++gdd++ al+ +Gf d Zmw_sc02158.1.g00040.1.am.mk 22 FRRIPMTTVTRIMHRALPRNSKINTDTKDAMNQCISEFTARLTHEAARVGKEESRQIMSGDDIILALGRMGFSD 95 5889********************************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.8E-20	17	96	IPR009072	Histone-fold
SuperFamily	SSF47113	2.42E-17	23	120	IPR009072	Histone-fold
Pfam	PF00808	7.6E-14	24	88	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MERPKAQGDI EPQGMEASPE DFRRIPMTTV TRIMHRALPR NSKINTDTKD AMNQCISEFT 60 ARLTHEAARV GKEESRQIMS GDDIILALGR MGFSDCRYHE SQGIMPHGWQ DELASQESMS 120 SSQVVVEQQL PAAMPTVGVE LQPPELNLTL GLALPVPRDV TELGLHEDVY KRSYVGKPRK 180 VQSWVGVLAP SSAMHINGAD GPHMMCPFIY YAITSPPHNA LAQHPAATSP PPHAPLYHPA 240 ATSHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-15	23	111	6	92	Transcription factor HapC (Eurofung)
4g92_B	1e-15	23	111	6	92	Transcription factor HapC (Eurofung)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14056	13	26