PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02158.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 170aa MW: 18893.7 Da PI: 5.2464

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02158.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	70.2	3.5e-22	2	84	11	93
NF-YB 11 anvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 + v+rim+ + P n+ki d+k+ +++c+ ef + +t ea+ ++e r+ ++gdd++ al+ +Gf dyv pl++ l++y e Zmw_sc02158.1.g00030.1.am.mk 2 TAVTRIMHCAQPRNSKINADTKDAMNQCILEFTARLTHEAAWVGKEESRRMMSGDDIILALGRMGFSDYVGPLTLLLQRYCES 84 679*****************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	3.5E-10	1	62	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.6E-19	3	100	IPR009072	Histone-fold
SuperFamily	SSF47113	1.59E-16	3	85	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MTAVTRIMHC AQPRNSKINA DTKDAMNQCI LEFTARLTHE AAWVGKEESR RMMSGDDIIL 60 ALGRMGFSDY VGPLTLLLQR YCESRAIMPR GWQTELASQE PMSSSQVVVE QQLQAAMPTV 120 GVELQPPEPD LTLGLAPPAP RHVTELELHE EVYKVWPRSV GPMPPANGNQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	1e-15	4	81	14	91	NF-YB
4awl_B	1e-15	4	81	15	92	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	1e-15	4	81	15	92	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14056	13	26