PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02158.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 419aa    MW: 46125.1 Da    PI: 9.5625
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02158.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB148.41.5e-4645139296
                         NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 
                                   reqdr++Pianv+r+m++vlP +akis+dak+++qecvsefisfvt+ea+d+c+ e+rkt++++d++wa+  lGf+dy++p
  Zmw_sc02158.1.g00020.1.am.mk  45 REQDRLMPIANVVRVMRRVLPPHAKISDDAKDVIQECVSEFISFVTGEANDRCHGEHRKTVTAEDVVWAMERLGFDDYLAP 125
                                   89******************************************************************************* PP

                         NF-YB  83 lkvylkkyrelege 96 
                                   +k+y+++ r+ +g+
  Zmw_sc02158.1.g00020.1.am.mk 126 IKAYVRRMRDYDGA 139
                                   *********99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.3E-4342141IPR009072Histone-fold
SuperFamilySSF471131.86E-3347145IPR009072Histone-fold
PfamPF008081.2E-2251114IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.3E-137896No hitNo description
PROSITE patternPS0068508197IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.3E-1397115No hitNo description
PRINTSPR006157.3E-13116134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MAMVPQSPIA NAPCPLAVEL EPAIPMEAAA ATEPPAPATE LVMIREQDRL MPIANVVRVM  60
RRVLPPHAKI SDDAKDVIQE CVSEFISFVT GEANDRCHGE HRKTVTAEDV VWAMERLGFD  120
DYLAPIKAYV RRMRDYDGAG RGGGDNAQTR VHVHHAPAPP LPMAAPHGVQ VQAPPVAFPN  180
SALAAHSSAP RHVSEPSATC SAVSVPLQPL TTERRRSAPR RPARRPWSSR RQTLLLVACI  240
TRTSPRLKIL IRCFAALTLP SPSWDERARR GLRRRPVVRP HLPCIVLLNY VRFITTDQVH  300
CTHASMQSVH RAQDSWNTHV SLSLSLSLSS VLTFNEFGWS GDVCTVTAVC ACRARGEEET  360
ATVLLCRWRH RALSRAAESM RWPFGERRPT AGIAPACSRS GDPRAQNMCV APWRLAPGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A8e-4442135497NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272279RRRPVVRP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331