PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02156.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 460aa MW: 52172.6 Da PI: 6.2791

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02156.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	222.5	2.1e-68	213	458	130	374
GRAS 130 qaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvl 208 + LasR++gpp+lRiTg++ pe+g +++eetg+rLa++Ae ++v+f+++ +++++e++++e+++++++E+l++n+ + Zmw_sc02156.1.g00080.1.am.mk 213 EHLASREGGPPKLRITGIDVPETGfhPCKTIEETGKRLAEYAELFNVSFDYHG-ISSQWENIRIEDINIDKDEVLIINCLH 292 68******************999999*********************.7********************** PP GRAS 209 qlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 ++ +l de+ +++s+rd+vL vk+++P+v+++ + ++s+ Fl rf e l y+s+lfd+l+++++r +e+ri +Er l Zmw_sc02156.1.g00080.1.am.mk 293 KMNNLGDETEDMDSARDRVLCNVKKMNPEVLIIGIVNGAYSSPFFLSRFKEVLFYFSSLFDMLNTTVARSHEARILIERYL 373 ***************************************************************************** PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 lg ++ nvvacegaer+er et+++Wr+r +aGFk++p+++ + k k + + + ++e+ ++l++gWk+r + ++ Zmw_sc02156.1.g00080.1.am.mk 374 LGADVLNVVACEGAERIERPETYKQWRRRSLKAGFKQLPVNQAILKRSTEETGKSYHEDFIIDEDGDWLLQGWKGRIMHAL 454 ******************************************9999999999888****************** PP GRAS 371 SaWr 374 S+W+ Zmw_sc02156.1.g00080.1.am.mk 455 SSWK 458 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	38.586	51	438	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.3E-66	213	458	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MLMEDVDERV GLHQGEDVLQ AAEKPFYDIL AQPLTSTGRS SRFGFPALQL RRGVEEAKGF 60 DKLLKGKKQL EKEVVDLRSL LIHCAQAVAA DDRQLAKGLE ARLAGIGSKV YYKLTAKRIS 120 IDVPRPGIDT LEGNEEVGKR LADYANEFKK DRACRSQEVA AMEVRRLGLA RTDRDEWAIT 180 RGVEEAKKLV PSIEKLGIDL ESNELFASMR TAEHLASREG GPPKLRITGI DVPETGFHPC 240 KTIEETGKRL AEYAELFNVS FDYHGISSQW ENIRIEDINI DKDEVLIINC LHKMNNLGDE 300 TEDMDSARDR VLCNVKKMNP EVLIIGIVNG AYSSPFFLSR FKEVLFYFSS LFDMLNTTVA 360 RSHEARILIE RYLLGADVLN VVACEGAERI ERPETYKQWR RRSLKAGFKQ LPVNQAILKR 420 STEETGKSYH EDFIIDEDGD WLLQGWKGRI MHALSSWKPK

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MLMEDVDERV GLHQGEDVLQ AAEKPFYDIL AQPLTSTGRS SRFGFPALQL RRGVEEAKGF  60
DKLLKGKKQL EKEVVDLRSL LIHCAQAVAA DDRQLAKGLE ARLAGIGSKV YYKLTAKRIS  120
IDVPRPGIDT LEGNEEVGKR LADYANEFKK DRACRSQEVA AMEVRRLGLA RTDRDEWAIT  180
RGVEEAKKLV PSIEKLGIDL ESNELFASMR TAEHLASREG GPPKLRITGI DVPETGFHPC  240
KTIEETGKRL AEYAELFNVS FDYHGISSQW ENIRIEDINI DKDEVLIINC LHKMNNLGDE  300
TEDMDSARDR VLCNVKKMNP EVLIIGIVNG AYSSPFFLSR FKEVLFYFSS LFDMLNTTVA  360
RSHEARILIE RYLLGADVLN VVACEGAERI ERPETYKQWR RRSLKAGFKQ LPVNQAILKR  420
STEETGKSYH EDFIIDEDGD WLLQGWKGRI MHALSSWKPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-23	215	460	150	381	Protein SCARECROW
5b3h_A	2e-23	215	460	149	380	Protein SCARECROW
5b3h_D	2e-23	215	460	149	380	Protein SCARECROW
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680798.1	1e-145	scarecrow-like protein 9
TrEMBL	A0A368QCG2	1e-143	A0A368QCG2_SETIT; Uncharacterized protein
TrEMBL	K3ZDA5	1e-143	K3ZDA5_SETIT; Uncharacterized protein
STRING	Pavir.Ca00616.1.p	1e-147	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118