PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc02155.1.g00200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 244aa MW: 27881.4 Da PI: 6.8828 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.4 | 9.5e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvt+skRr+gi+KKA EL vLCda+va+i+fsstgk +e++s Zmw_sc02155.1.g00200.1.sm.mk 9 KRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 63.4 | 8.5e-22 | 71 | 163 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 yq++ g+sl+ +++e++q+ l+ Lk+ ++nL++e+R+++GedL+sL+++eL+ Leq+++ +lk ++++ +q+e+ + Zmw_sc02155.1.g00200.1.sm.mk 71 YQQTVGNSLWVEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDSLEFEELRALEQNVDVALK-----EYHVISTQTETYK 146 7899999******************************************************97.....599********** PP K-box 82 kkekelqeenkaLrkkl 98 kk k e+ k+L+++l Zmw_sc02155.1.g00200.1.sm.mk 147 KKVKHSYEAYKNLQQEL 163 ************99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.6E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.59 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-36 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.14E-42 | 2 | 80 | No hit | No description |
PRINTS | PR00404 | 2.8E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.1E-14 | 82 | 163 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.012 | 84 | 169 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 244 aa Download sequence Send to blast |
MGRGKIEIKR IENATNRQVT YSKRRTGIMK KARELTVLCD AQVAIIMFSS TGKYHEFCSP 60 GTDIKTIFDR YQQTVGNSLW VEQYENMQRT LSHLKDINRN LRTEIRQRMG EDLDSLEFEE 120 LRALEQNVDV ALKEYHVIST QTETYKKKVK HSYEAYKNLQ QELTKRTCFF IDQTHESSSE 180 DVFVQGMREE PAYGFVDNTD AGWDGAMALG GGGGAAADMY AFRVVPSQPN LHGVAYGSHD 240 LRLS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-17 | 1 | 73 | 1 | 71 | MEF2C |
5f28_B | 2e-17 | 1 | 73 | 1 | 71 | MEF2C |
5f28_C | 2e-17 | 1 | 73 | 1 | 71 | MEF2C |
5f28_D | 2e-17 | 1 | 73 | 1 | 71 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS4. {ECO:0000269|PubMed:12506001, ECO:0000269|PubMed:12905025, ECO:0000269|PubMed:14558657}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812646.1 | 1e-145 | MADS-box transcription factor 16 | ||||
Swissprot | Q944S9 | 1e-126 | MAD16_ORYSJ; MADS-box transcription factor 16 | ||||
TrEMBL | A0A2S3HGN1 | 1e-143 | A0A2S3HGN1_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DU70 | 1e-143 | A0A2T7DU70_9POAL; Uncharacterized protein | ||||
STRING | Si007221m | 1e-141 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5728 | 35 | 52 |