PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02154.1.g00110.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRF

Protein Properties

Length: 297aa MW: 31582.7 Da PI: 10.0759

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02154.1.g00110.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	40.2	5.9e-13	154	176	1	23
WRC 1 daepgrCrRtDGKkWRCsrrvle 23 ++epgrCrRtDGKkWRCsr+v++ Zmw_sc02154.1.g00110.1.sm.mk 154 EPEPGRCRRTDGKKWRCSRDVVR 176 69*******************86 PP
2	QLQ	46.8	8.8e-17	87	122	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 a+T +Q q+L++Q+l+y+yLaa++ vP +L+++i+k Zmw_sc02154.1.g00110.1.sm.mk 87 ALTFMQQQELEQQVLIYRYLAAGAAVPVHLVLPIWK 122 89********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.2E-4	86	122	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.36	87	122	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.7E-10	87	121	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	13.486	154	202	IPR014977	WRC domain
Pfam	PF08879	1.4E-9	155	176	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MAEDKETDLT STQPPSKLPR LSSADPDAAE LGHVSRVLDR FAELYYTDTV TTAAALSPLV 60 LGLGLGLGVG RDSTGERDAE ANKARPALTF MQQQELEQQV LIYRYLAAGA AVPVHLVLPI 120 WKSVAASSFS PQRSPSLALM GLGSLCFDYR HSTEPEPGRC RRTDGKKWRC SRDVVRATST 180 ASGTSTAAAA VQESLWKPHP RAPPRPSPPT TTAARARPQG LRGSASRPPP PPASSSPTAY 240 LSRNFSNRIA PLDGMRGLRC LVGRRAAGST AFVVPTGDSA ERRDLSAASA ASPLWEA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004955149.1	1e-60	growth-regulating factor 10
Swissprot	Q6EPP9	3e-59	GRF10_ORYSJ; Growth-regulating factor 10
TrEMBL	K3YVF6	3e-59	K3YVF6_SETIT; Uncharacterized protein
STRING	Si018252m	4e-60	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6221	30	51

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]