PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02141.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 308aa    MW: 33927.4 Da    PI: 10.5435
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02141.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.5e-20215268356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k++++t+eq++ Le+ Fe+++++  e+++eLA++lg+  rqV vWFqNrRa++k
  Zmw_sc02141.1.g00100.1.am.mk 215 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWK 268
                                   56789************************************************9 PP
2HD-ZIP_I/II1309.3e-42214303190
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   ekkrrl++eqv++LE+sFeee+kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE+d+++Lk+aydal+++++ L 
  Zmw_sc02141.1.g00100.1.am.mk 214 EKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLETDFDRLKAAYDALAADHQGLL 294
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLree 90 
                                   +++++Lr++
  Zmw_sc02141.1.g00100.1.am.mk 295 ADNDRLRAQ 303
                                   ******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.76E-19209272IPR009057Homeodomain-like
PROSITE profilePS5007118.236210270IPR001356Homeobox domain
SMARTSM003894.6E-19213274IPR001356Homeobox domain
PfamPF000461.1E-17215268IPR001356Homeobox domain
CDDcd000862.40E-17215271No hitNo description
Gene3DG3DSA:1.10.10.603.1E-21216276IPR009057Homeodomain-like
PRINTSPR000315.3E-6241250IPR000047Helix-turn-helix motif
PROSITE patternPS000270245268IPR017970Homeobox, conserved site
PRINTSPR000315.3E-6250266IPR000047Helix-turn-helix motif
PfamPF021831.1E-11270303IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MWLTQLALDK VRSDSFQIRH GSSAAPAQVF IVRGSGDAEK GKVGILWQHR PKGEKKKMVP  60
GRSVRSPEGA ARRRKPGSVP LAGVMGFSLR LDGLGSGGRC ATLVAGEVFV RARAPERAGE  120
RACVHGGEGY RRRQEGGSSM DPGRMGFDSG GARWGGGPQM LLFGGGGSAN SNGFIRGVPM  180
AVLGRDDDAH VGKRPFFTTH EELIEEYYDE QAPEKKRRLT AEQVQMLERS FEEENKLEPE  240
RKTELARRLG MAPRQVAVWF QNRRARWKTK QLETDFDRLK AAYDALAADH QGLLADNDRL  300
RAQGIGCN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15474KKKMVPGRSVRSPEGAARRRK
2262270RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973433.11e-84homeobox-leucine zipper protein HOX5
SwissprotQ6ZA745e-74HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5
SwissprotQ9XH365e-74HOX5_ORYSI; Homeobox-leucine zipper protein HOX5
TrEMBLB4FLB15e-89B4FLB1_MAIZE; HB transcription factor
STRINGPavir.Fb01301.1.p7e-85(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]