PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02127.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 353aa    MW: 38452.6 Da    PI: 7.4459
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02127.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-05177196120
                                   EEETTTTEEESSHHHHHHHH CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                   ++C  C+k+F+r  n++ H+
  Zmw_sc02127.1.g00060.1.am.mk 177 FSCAVCNKTFNRFNNMQMHM 196
                                   89*****************9 PP
2zf-C2H213.70.00018267289123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y C  Cgk+F  + + ++H +++
  Zmw_sc02127.1.g00060.1.am.mk 267 YACRRCGKRFAVRGDWRTHEKNC 289
                                   89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.05E-5172198No hitNo description
Gene3DG3DSA:3.30.160.603.9E-5177196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.64177199IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.055177204IPR007087Zinc finger, C2H2
PROSITE patternPS000280179199IPR007087Zinc finger, C2H2
SMARTSM00355220230262IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.9E-6252287No hitNo description
Gene3DG3DSA:3.30.160.601.4E-6253287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035558267287IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704267287IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MHSYRAMHPY STHQYHHASL PSSKQGGEDN DDDQSMLRLS LWPPGHHQSM AASPACSSSP  60
SIISTTSMTA ATAASYPWLN QQGHYSNGGG GGGMGSSSSS HGSFLFHEQQ QQQEPDVSIS  120
LSIAPPRSNA SAVCGGGFAA PAALPSTVTT VTPGGSQVPS QYWIPSAAEI LVGSTQFSCA  180
VCNKTFNRFN NMQMHMWGHG SQYRKGSESL RGAITVGTAP PASLMRLPCY CCAEGCRNNI  240
DHPRARPLKD FRTLQTHYRR KHGARPYACR RCGKRFAVRG DWRTHEKNCG KLWFCVCGSD  300
FKHKRSLKDH VRSFGGGHAP HIAESVAVED DEDEDDDHED ADQMDEPSDM VVV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460014.11e-168zinc finger protein WIP6
SwissprotQ9FX681e-100ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLC5X9191e-167C5X919_SORBI; Uncharacterized protein
STRINGSb02g020840.11e-167(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241