PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02125.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 470aa MW: 48278 Da PI: 7.5275

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02125.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.7	7e-37	179	283	6	111
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnss 86 r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqq++pai+++tgt++ +a ++ +++ + ++s Zmw_sc02125.1.g00060.1.am.mk 179 PRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIAT-TVDGVLRIPTQS 258 6999********************************************************88888444.444444444444 PP TCP 87 sgkaaksaakskksqksaasalnla 111 s+++++sa + ++s+a+ + + Zmw_sc02125.1.g00060.1.am.mk 259 SSSSSPSALAVVDGDESSAKRRRKL 283 4433333332222222222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.381	181	235	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.4E-30	181	273	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008361	Biological Process	regulation of cell size
GO:0048364	Biological Process	root development
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MSCGALACLQ ACSLKLVHCP THPTCNTINS YRWIQLGRPG PSASGPRSTA GPAATITIKA 60 AGPGTGQPGP HPDPVGRLPR DSCDAQIREP SKPSLLPPTR NERDEPQATN PAASCSIRAM 120 EAPQAQDRAA AEEDAARQHQ VPSGGGAAMG AIPMHGFIVP KPEPVEYFSG MAMVRKPPPR 180 NRDRHTKVEG RGRRIRMPAA CAARIFQLTR ELGHKSDGET IRWLLQQSEP AIIAATGTGT 240 VPAIATTVDG VLRIPTQSSS SSSPSALAVV DGDESSAKRR RKLQPTRAGA SPLATAAPAA 300 YYPVVADPLL QGTGGAAISV PSGLAPVGAS GAPQGLVPVF AVPAAGGPVT GGANRMIPQA 360 TAVWMVPQPG GAAGAGNQPA QFWAFPAAPQ LINLAGAQTV PAGAVYQTSV SVAGYQQPQQ 420 QISTTSTHNN NKSEQQHPGS GSRGGGGADH PVEEDDDDDE EPVSDSSPEE

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MSCGALACLQ ACSLKLVHCP THPTCNTINS YRWIQLGRPG PSASGPRSTA GPAATITIKA  60
AGPGTGQPGP HPDPVGRLPR DSCDAQIREP SKPSLLPPTR NERDEPQATN PAASCSIRAM  120
EAPQAQDRAA AEEDAARQHQ VPSGGGAAMG AIPMHGFIVP KPEPVEYFSG MAMVRKPPPR  180
NRDRHTKVEG RGRRIRMPAA CAARIFQLTR ELGHKSDGET IRWLLQQSEP AIIAATGTGT  240
VPAIATTVDG VLRIPTQSSS SSSPSALAVV DGDESSAKRR RKLQPTRAGA SPLATAAPAA  300
YYPVVADPLL QGTGGAAISV PSGLAPVGAS GAPQGLVPVF AVPAAGGPVT GGANRMIPQA  360
TAVWMVPQPG GAAGAGNQPA QFWAFPAAPQ LINLAGAQTV PAGAVYQTSV SVAGYQQPQQ  420
QISTTSTHNN NKSEQQHPGS GSRGGGGADH PVEEDDDDDE EPVSDSSPEE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00667	PBM	Transfer from GSVIVG01027588001	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008664491.3	1e-147	transcription factor PCF2
Swissprot	A2YXQ1	1e-145	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	1e-145	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	A0A317Y4S8	1e-145	A0A317Y4S8_MAIZE; Transcription factor PCF2
STRING	ORUFI08G24920.1	1e-144	(Oryza rufipogon)
STRING	OS08T0544800-01	1e-144	(Oryza sativa)
STRING	ONIVA08G25460.1	1e-144	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]