PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02124.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 628aa MW: 68786.7 Da PI: 7.3932

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02124.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.7	1.1e-28	530	581	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yF++++kdAA++Lgvc+T+LKriCRq+GI RWP+Rk+k++ Zmw_sc02124.1.g00040.1.sm.mk 530 AEKTVSLQVLRQYFAGSLKDAARSLGVCPTTLKRICRQHGITRWPSRKLKKV 581 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.848	518	601	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-25	533	581	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence Send to blast
MGGGGGGGGD PRPSVSALAC TPSEGDLDLL EQLLSGDNAW LEVASRSPSS LASPPATAFF 60 AADATATTVT ATTGNTGCLL QTGGASPSSV RERFNQALAY IRETQSDGNV LVQLWVPVKG 120 HEGRLVLTTS GQPFTLDHRS DSLIRFREVS TKYHFSADVT SGTPGLPGRV FIGRLPEWSP 180 DVRYFTSYEY PRVSHAQILD VHGTMGLPVF EKGSYSCLGV IELIMTKQKL NFTPELNAIC 240 SALQAVNLRS TEVSNIPRIK FSSASYKDAL SEILEVLKAA CLIHKLPLAQ TWVTCAQQGK 300 RGSRHSDENY HYCISTIDEA CFVNEPRMQN FHEACSEHHL LRGEGVAGKA FTTNQPCFQP 360 DIGSSAKLDY PLSHHAKIFN LKGAVAIRLR CTRTGSADFV LEFFLPTDCE ALEEQKAVLD 420 SLSETMRSVC QTLRVVTDKE MEEETVLEMN ELNSFTPQGK NRVEELSFGY NSRDHRGETT 480 WTSVAETSHQ ESGLAALRMH GMFPPDEQGP SLSGAQITAE GRKAKRRTKA EKTVSLQVLR 540 QYFAGSLKDA ARSLGVCPTT LKRICRQHGI TRWPSRKLKK VDHSLKKLQE IIDSVHGAER 600 AFQLNTLYKD LANTSISSDN NLPGSITK

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence Send to blast

MGGGGGGGGD PRPSVSALAC TPSEGDLDLL EQLLSGDNAW LEVASRSPSS LASPPATAFF  60
AADATATTVT ATTGNTGCLL QTGGASPSSV RERFNQALAY IRETQSDGNV LVQLWVPVKG  120
HEGRLVLTTS GQPFTLDHRS DSLIRFREVS TKYHFSADVT SGTPGLPGRV FIGRLPEWSP  180
DVRYFTSYEY PRVSHAQILD VHGTMGLPVF EKGSYSCLGV IELIMTKQKL NFTPELNAIC  240
SALQAVNLRS TEVSNIPRIK FSSASYKDAL SEILEVLKAA CLIHKLPLAQ TWVTCAQQGK  300
RGSRHSDENY HYCISTIDEA CFVNEPRMQN FHEACSEHHL LRGEGVAGKA FTTNQPCFQP  360
DIGSSAKLDY PLSHHAKIFN LKGAVAIRLR CTRTGSADFV LEFFLPTDCE ALEEQKAVLD  420
SLSETMRSVC QTLRVVTDKE MEEETVLEMN ELNSFTPQGK NRVEELSFGY NSRDHRGETT  480
WTSVAETSHQ ESGLAALRMH GMFPPDEQGP SLSGAQITAE GRKAKRRTKA EKTVSLQVLR  540
QYFAGSLKDA ARSLGVCPTT LKRICRQHGI TRWPSRKLKK VDHSLKKLQE IIDSVHGAER  600
AFQLNTLYKD LANTSISSDN NLPGSITK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800527.1	0.0	protein NLP1-like isoform X2
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A1E5UP36	0.0	A0A1E5UP36_9POAL; Protein NLP5
STRING	Pavir.Bb02544.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5554	38	52

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]