PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02117.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 308aa MW: 33020.6 Da PI: 7.7817

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02117.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57.2	4.4e-18	114	201	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtses 75 +Wt+ + L++a++++ e+l+rg+l++ +We+v++++ ++ +s +qCk+k++nl+kryk + ++ + s++ Zmw_sc02117.1.g00020.1.sm.mkhc 114 EWTDGAIGSLLDAYTDRFEQLNRGNLRGRDWEDVAAAVtdgqGKTSGVKSVEQCKNKIDNLKKRYKVECQRLAG--SGA 190 5***********************************7765333445799***********99999998..688 PP trihelix 76 sstcpyfdqle 86 +s++p+f+++e Zmw_sc02117.1.g00020.1.sm.mkhc 191 TSHWPWFRKME 201 889*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.0E-21	112	203	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005737	Cellular Component	cytoplasm

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MASCDDDFGL LADDAHPTPP PQPPTVQQPA PQLCFADAAA AASATTGPFV PAQEESNHHA 60 ERDKAAPSGK RGREEFNSDG GEYSSYINSS GVGGKKGRGG GGGGSSDYRK DREEWTDGAI 120 GSLLDAYTDR FEQLNRGNLR GRDWEDVAAA VTDGQGKTSG VKSVEQCKNK IDNLKKRYKV 180 ECQRLAGSGA TSHWPWFRKM EQIVGNSASP ASSKPLVTSD DDKARQMPQH SSKRYTVSCA 240 APPNVVGASR GNPFSNPRWK RVLLKIGGTA LAGEAPQNVD HKVDICSLLS SLTCWSLVTS 300 PERFVEIK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	100	GGKKGRGGG

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00340	DAP	Transfer from AT3G10030	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008668441.1	1e-122	uncharacterized protein LOC100383551 isoform X1
TrEMBL	A0A3L6PXU1	1e-121	A0A3L6PXU1_PANMI; Uncharacterized protein
STRING	GRMZM2G002978_P02	1e-120	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1935	34	42