PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02112.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 328aa MW: 35515.9 Da PI: 6.4388

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02112.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.5	5.9e-35	103	191	1	83
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......ea 75 aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai el++ + +a + e+ Zmw_sc02112.1.g00010.1.am.mk 103 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIRNAKAAIEELPDRPEAAAAAEaaaeatEQ 183 689**************************************************************4444411111211222 PP TCP 76 esssssas 83 ++++ s+s Zmw_sc02112.1.g00010.1.am.mk 184 GEQVTSTS 191 22222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.9E-32	105	214	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.615	106	164	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MASRFKLEED KNQLSEGLDP WSNNPTATTS TLHYLLQEKE RAQAQEQLQI YHHQGFSYLE 60 HHRRQQQNQS TGGAGCDGLS SGESTPVDAL TTAFGSGRIV RSAAGRKDRH SKVCTARGLR 120 DRRVRLAAHT AIRFYDVQDR LGYDRPSKAV DWLIRNAKAA IEELPDRPEA AAAAEAAAEA 180 TEQGEQVTST SYGFSNPGGA ITAVAGGSFV QHSGADERNQ RILSWHASEN STGDGRGGGN 240 GDSYMFGMQP QSQVLPQGEP LQSSGGWASA RTWLDPLTAI QQPSTMTGQV GFSHLIGGAG 300 FMGFLAPATT HQRLQCEEEQ GSEAMRRD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	6e-20	111	165	1	55	Putative transcription factor PCF6
5zkt_B	6e-20	111	165	1	55	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004972181.1	1e-119	transcription factor PCF7
Swissprot	Q8LT05	2e-81	PCF7_ORYSJ; Transcription factor PCF7
TrEMBL	A0A3L6R021	1e-138	A0A3L6R021_PANMI; Uncharacterized protein
STRING	MLOC_12004.1	1e-135	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12056	23	30