PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02110.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 285aa MW: 30554.7 Da PI: 6.5213

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02110.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	68.6	1e-21	182	244	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elk+++rkq+NRe+ArrsR+RK+ae+eeL +++++L +eN++L+ ele+++ke+++l s++ Zmw_sc02110.1.g00050.1.sm.mkhc 182 ERELKKQKRKQSNRESARRSRLRKQAECEELGQRAESLRSENSSLRAELERIRKEYEQLLSQN 244 89**********************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	3.2E-28	1	97	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF16596	3.0E-9	108	164	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.6E-17	179	243	No hit	No description
Pfam	PF00170	4.7E-20	182	244	IPR004827	Basic-leucine zipper domain
SMART	SM00338	7.2E-21	182	246	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.288	184	247	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.25E-11	185	242	No hit	No description
CDD	cd14702	4.09E-24	187	237	No hit	No description
PROSITE pattern	PS00036	0	189	204	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MGSNDPGTPS KTSKASEQDQ PPATTSGTTA SVYPDWTPFQ AYSAMPPHGF FPPPVAANSQ 60 AHPYMWGAQP MVPPYGTPPP PYVMYPPGTV YAHPSTPPGA APGAPEMNGG SQNGSSYSAS 120 QGMVNQGMSM LPIQPGAMVG VPGSTTNLNI GMDYWAASGS AAVPAMHSKV PAGSARGDQW 180 DERELKKQKR KQSNRESARR SRLRKQAECE ELGQRAESLR SENSSLRAEL ERIRKEYEQL 240 LSQNASLKER LGGTSNLVPD MNEQNDGDGS SKKQPDSDAQ SEHEH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	198	204	RRSRLRK
2	198	205	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952026.1	1e-162	transcription factor HBP-1a
Swissprot	P23922	8e-74	HBP1A_WHEAT; Transcription factor HBP-1a
TrEMBL	K3YTP1	1e-160	K3YTP1_SETIT; Uncharacterized protein
STRING	Si017637m	1e-161	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2147	37	96

Publications ? help Back to Top
Tabata T,Nakayama T,Mikami K,Iwabuchi M HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat. EMBO J., 1991. 10(6): p. 1459-67 [PMID:2026143] Tabata T, et al. A protein that binds to a cis-acting element of wheat histone genes has a leucine zipper motif. Science, 1989. 245(4921): p. 965-7 [PMID:2772648] Mikami K, et al. Developmental and tissue-specific regulation of the gene for the wheat basic/leucine zipper protein HBP-1a(17) in transgenic Arabidopsis plants. Mol. Gen. Genet., 1995. 248(5): p. 573-82 [PMID:7476857] Nakayama T,Okanami M,Meshi T,Iwabuchi M Dissection of the wheat transcription factor HBP-1a(17) reveals a modular structure for the activation domain. Mol. Gen. Genet., 1997. 253(5): p. 553-61 [PMID:9065688] Okanami M,Meshi T,Tamai H,Iwabuchi M HALF-1, a bZIP-type protein, interacting with the wheat transcription factor HBP-1a contains a novel transcriptional activation domain. Genes Cells, 1996. 1(1): p. 87-99 [PMID:9078369]