PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02098.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 346aa MW: 37841.7 Da PI: 6.7424

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02098.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.3e-09	154	196	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + E++RR+r+ +++ L l+P++ +K + a++ A+eYI++L Zmw_sc02098.1.g00080.1.sm.mk 154 KKEKQRRQRLSEKYTALMLLIPNR-----TKDDRATVISDAIEYIQEL 196 57*******************9.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.722	147	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-5	153	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-6	154	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-8	156	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.61E-10	156	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.98E-7	156	196	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MYHPHCELLM GHDTLDLDAG HPQLTASSVA TIPTELSFQL FDSLDAAAAA SQPTVDYFFG 60 GADHQSTVKY EALAPAGSHH ATNMLRDYYA MGEQYLPRTR AGAALVFGAP DDESAAYMAG 120 AFQCSPLPRP AGSRKRSRAV SGGFHGGLVN GVEKKEKQRR QRLSEKYTAL MLLIPNRTKD 180 DRATVISDAI EYIQELGRTV EELTLLVEKK RRRREQQGDV VDAAPAAVVA GTEADSSEGE 240 VVAPTPAAVQ RQPIRSTYIQ RKSKDTFVDV RIVEEEVNIK LTKRRRDGCL AAASRALDEL 300 RLDLVHLSGG KIGDCHIYMF NTKIHPGSSV FASAVASRLI EVVDEY

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MYHPHCELLM GHDTLDLDAG HPQLTASSVA TIPTELSFQL FDSLDAAAAA SQPTVDYFFG  60
GADHQSTVKY EALAPAGSHH ATNMLRDYYA MGEQYLPRTR AGAALVFGAP DDESAAYMAG  120
AFQCSPLPRP AGSRKRSRAV SGGFHGGLVN GVEKKEKQRR QRLSEKYTAL MLLIPNRTKD  180
DRATVISDAI EYIQELGRTV EELTLLVEKK RRRREQQGDV VDAAPAAVVA GTEADSSEGE  240
VVAPTPAAVQ RQPIRSTYIQ RKSKDTFVDV RIVEEEVNIK LTKRRRDGCL AAASRALDEL  300
RLDLVHLSGG KIGDCHIYMF NTKIHPGSSV FASAVASRLI EVVDEY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	208	213	KKRRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269\|PubMed:24755456, ECO:0000269\|PubMed:24894043}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815629.1	1e-170	transcription factor TIP2-like
Swissprot	Q5JNS0	1e-156	TIP2_ORYSJ; Transcription factor TIP2
TrEMBL	A0A1E5UWC6	1e-177	A0A1E5UWC6_9POAL; Transcription factor TIP2
STRING	Pavir.Eb01270.1.p	1e-171	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1904	37	96