PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02085.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 783aa MW: 82947.8 Da PI: 9.5487

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02085.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117	1.1e-36	472	572	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk +rrkC++dC+lapyfpa++p+++a+v+++FGasn+ ++l++lp +er +a++++++eA r++dPvyG++gvi Zmw_sc02085.1.g00060.1.am.mk 472 RCAACKNQRRKCSRDCILAPYFPASDPQRYACVQRVFGASNIARVLQSLPVHERGNAADTMAMEAYRRVQDPVYGCAGVIV 552 6****************************************************************************** PP DUF260 82 klqqqleqlkaelallkeel 101 +lq++++ +++ela++++++ Zmw_sc02085.1.g00060.1.am.mk 553 RLQEEIRAAQSELARTQAQI 572 *************99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.630.10	1.6E-4	65	112	No hit	No description
SuperFamily	SSF52025	5.62E-43	113	298	No hit	No description
Gene3D	G3DSA:3.50.30.30	6.7E-37	146	298	No hit	No description
PROSITE profile	PS50891	24.066	471	572	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.0E-36	472	569	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 783 aa Download sequence Send to blast
MAHSSSHPGP LARLPSGSAR FLVAFGLLLL VSLLVVHRRP ALTGNSGGRH PDPAALFLSL 60 SAGANATIAV DLRALTAGPH LAGTRAAAGP ADYVLARFRA AGLQTLTREY QPLLSYPSRA 120 SLALLRPDGS LLGRLSVEEP ADVGRRLMQP YHAYAPSGEA VAEAVFVNLG RKEDYLALER 180 LGVAVRGRIA LAVRGGGYRG GVVARAAERG AVAVLIAGHA DGGVERGTVL LSGPGDPLTP 240 GWAATPQAER FDFDHEAVKQ RFPKIPSMPI SFKTAVAIIQ TLHGQAIPAE WKTNLGVDEG 300 CVKDPDVMGK MVHDTWKEMD GSINLYSPPE DYESKLSFFP GIADIISRLG NVTVEERQLA 360 LNHEVWKISR AIQRAASVLN ASFTSIWSAA AAFPPLTISA SCSRAGRMQT TDQAFAVDET 420 LTPSRSPDHT PLAQRRHSKI SPFPAWNLAV APSNHIMSMS ANAEASATPS RRCAACKNQR 480 RKCSRDCILA PYFPASDPQR YACVQRVFGA SNIARVLQSL PVHERGNAAD TMAMEAYRRV 540 QDPVYGCAGV IVRLQEEIRA AQSELARTQA QIATHQLMNA QVPAPPPPPP SPQQQAGDAL 600 TVQQEPFQGL DALLLDDARP ATGRACEVGG VQAEKIRLPT LRGSAASSVG LAASRSPHSP 660 IGTPTCGRGR LAAVRPVASP AQGRRPAAPH WFDLIPIGPG RGSQAGSHLT CQTLAVCSIY 720 AFVVLGPAVD SLSRYLSTTS RPQSSLTTGI VAGTSIWNVV VEFAGPVQTL NSFLAVLMAS 780 LIA

Sequence ? help Back to Top

Protein Sequence Length: 783 aa Download sequence Send to blast

MAHSSSHPGP LARLPSGSAR FLVAFGLLLL VSLLVVHRRP ALTGNSGGRH PDPAALFLSL  60
SAGANATIAV DLRALTAGPH LAGTRAAAGP ADYVLARFRA AGLQTLTREY QPLLSYPSRA  120
SLALLRPDGS LLGRLSVEEP ADVGRRLMQP YHAYAPSGEA VAEAVFVNLG RKEDYLALER  180
LGVAVRGRIA LAVRGGGYRG GVVARAAERG AVAVLIAGHA DGGVERGTVL LSGPGDPLTP  240
GWAATPQAER FDFDHEAVKQ RFPKIPSMPI SFKTAVAIIQ TLHGQAIPAE WKTNLGVDEG  300
CVKDPDVMGK MVHDTWKEMD GSINLYSPPE DYESKLSFFP GIADIISRLG NVTVEERQLA  360
LNHEVWKISR AIQRAASVLN ASFTSIWSAA AAFPPLTISA SCSRAGRMQT TDQAFAVDET  420
LTPSRSPDHT PLAQRRHSKI SPFPAWNLAV APSNHIMSMS ANAEASATPS RRCAACKNQR  480
RKCSRDCILA PYFPASDPQR YACVQRVFGA SNIARVLQSL PVHERGNAAD TMAMEAYRRV  540
QDPVYGCAGV IVRLQEEIRA AQSELARTQA QIATHQLMNA QVPAPPPPPP SPQQQAGDAL  600
TVQQEPFQGL DALLLDDARP ATGRACEVGG VQAEKIRLPT LRGSAASSVG LAASRSPHSP  660
IGTPTCGRGR LAAVRPVASP AQGRRPAAPH WFDLIPIGPG RGSQAGSHLT CQTLAVCSIY  720
AFVVLGPAVD SLSRYLSTTS RPQSSLTTGI VAGTSIWNVV VEFAGPVQTL NSFLAVLMAS  780
LIA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-28	473	567	12	113	LOB family transfactor Ramosa2.1
5ly0_B	5e-28	473	567	12	113	LOB family transfactor Ramosa2.1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8038	6	7