PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02073.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 502aa MW: 52351.4 Da PI: 8.0103

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02073.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.1	4.1e-29	243	302	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+ ed++++++tYeg H h+ Zmw_sc02073.1.g00080.1.sm.mkhc 243 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApNCPVRKQVQRCVEDKSILITTYEGAHSHP 302 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.5E-31	228	304	IPR003657	WRKY domain
SuperFamily	SSF118290	7.32E-27	236	304	IPR003657	WRKY domain
PROSITE profile	PS50811	27.542	238	304	IPR003657	WRKY domain
SMART	SM00774	4.7E-35	243	303	IPR003657	WRKY domain
Pfam	PF03106	1.0E-25	244	302	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MEVAVEGPLV EAEKRVDAKP EIAPIGRSAL PTVFESFQSP QRAASIEQEE SNRLEAARAE 60 MGEVKEENER LKTLLSHIAS DHQSLQMRFL KVREQAAAKS TKLPAEEAPA AAPSPVAYDD 120 LVSLSLGRGV ANGAGARRKG HERSSSSSGT ADDGSHLSLG LGFGRPGKDD EKTEPVLNLN 180 RSSDSSSVED TAKPSEAESC RPGETRKSPS GGAGARDGGD DEVQQQAKKT RVSVRVKCDT 240 PTMNDGCQWR KYGQKISKGN PCPRAYYRCT VAPNCPVRKQ VQRCVEDKSI LITTYEGAHS 300 HPLPPAATAM ASTTSAAAAM LTAGSTSSTT AASQLARHHL QVASAAGLLG PTTNMVSTAT 360 SCPTITLDLT APALTPAAQS IMHSSPYAAA GYESKAVPAA WSTSGYPAYG GNHLPSYYAA 420 ARSSPAMGSL FGGLALSRPD QLFGQPSYQQ RSSSLGAQSA VAPVVTDTLA KAITSDPSFQ 480 SALAAMITSY MGRGGGGEAA QK

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MEVAVEGPLV EAEKRVDAKP EIAPIGRSAL PTVFESFQSP QRAASIEQEE SNRLEAARAE  60
MGEVKEENER LKTLLSHIAS DHQSLQMRFL KVREQAAAKS TKLPAEEAPA AAPSPVAYDD  120
LVSLSLGRGV ANGAGARRKG HERSSSSSGT ADDGSHLSLG LGFGRPGKDD EKTEPVLNLN  180
RSSDSSSVED TAKPSEAESC RPGETRKSPS GGAGARDGGD DEVQQQAKKT RVSVRVKCDT  240
PTMNDGCQWR KYGQKISKGN PCPRAYYRCT VAPNCPVRKQ VQRCVEDKSI LITTYEGAHS  300
HPLPPAATAM ASTTSAAAAM LTAGSTSSTT AASQLARHHL QVASAAGLLG PTTNMVSTAT  360
SCPTITLDLT APALTPAAQS IMHSSPYAAA GYESKAVPAA WSTSGYPAYG GNHLPSYYAA  420
ARSSPAMGSL FGGLALSRPD QLFGQPSYQQ RSSSLGAQSA VAPVVTDTLA KAITSDPSFQ  480
SALAAMITSY MGRGGGGEAA QK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-21	230	306	1	76	WRKY transcription factor 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	227	236	KKTRVSVRVK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457211.1	0.0	probable WRKY transcription factor 72
TrEMBL	C5XM16	0.0	C5XM16_SORBI; Uncharacterized protein
STRING	Sb03g003370.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12081	29	38