PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02072.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 368aa    MW: 39516.4 Da    PI: 4.3819
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02072.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-19123174156
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                                   ++++GVr ++ +g+++AeIrd +     r  r++lg+f+taeeAak ++ a+ +l+g+
  Zmw_sc02072.1.g00050.1.sm.mk 123 PRFRGVRKRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAIQLRGA 174
                                   689*******.**********88.....55*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-11123173IPR001471AP2/ERF domain
CDDcd000181.76E-28123180No hitNo description
SuperFamilySSF541714.18E-20124181IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-28124181IPR001471AP2/ERF domain
SMARTSM003803.1E-33124187IPR001471AP2/ERF domain
PROSITE profilePS5103222.669124181IPR001471AP2/ERF domain
PRINTSPR003675.0E-10125136IPR001471AP2/ERF domain
PRINTSPR003675.0E-10147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MWNMEDEEMF VAVRRTEHVE LVTTRAVSVD SAASKDAGPG PRTVRVFCDD YDATDSSGDD  60
DDDDAYALAA ARRRVKRYVQ EVRLEPAAAK DSPAAAKPSS TKARLALPVS GRKRKDDGPG  120
GEPRFRGVRK RPWGKYAAEI RDPWRRVRVW LGTFDTAEEA AKVYDSAAIQ LRGADATTNF  180
GQVAPDDADA DRFTAQPPAP AASSKNNASS SSATSSYDSG QESSHVAAAA SPTSVLRSFP  240
PSAEDTGAAC AKKSTYTKPG GELPPSVAET GESSGVFGCP FSDYVSLSSG DEFPPVVTDF  300
DSLFGDFPEP PLDFLAELPD EVPLFPVCDE RQQKTSSSSS SPAKWQQVDD LFQDITDLFQ  360
IDPLPAVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-18118180771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457105.21e-121ethylene-responsive transcription factor CRF2
TrEMBLA0A1B6Q0S91e-120A0A1B6Q0S9_SORBI; Uncharacterized protein
STRINGGRMZM2G142179_P011e-113(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697