PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02063.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 438aa    MW: 47855.9 Da    PI: 9.2188
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02063.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.62e-12801443199
                                   .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                            B3  31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                   +++ t  + ++ g++W+v +   + +++ +l++GW eF  a+g+ +g fvv+++dg +   l+vk f++
  Zmw_sc02063.1.g00040.1.sm.mk  80 AREATALVVSPFGKVWRVGV--GRDGEGAFLGRGWAEFLAAHGIGVGWFVVLRHDGGD--ALTVKSFDT 144
                                   4567889999**********..99999**************************87743..358888876 PP
2B338.42.2e-121662461496
                                   T-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                            B3  14 grlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                     l++p kf++++        +     +l ++ g+ W++ l  +k ++++++++GW++F  ++g+ egD+v+++++g++ f
  Zmw_sc02063.1.g00040.1.sm.mk 166 EFLIIPAKFLKDYvteeY-L-NIFCISILVSPLGKFWRIVL--EKDQSGVFFADGWSQFLTSHGISEGDIVLLRYEGNMVF 242
                                   5699******99976531.2.2333457889**********..****9****************************99999 PP

                                   ..EEEE CS
                            B3  91 elvvkv 96 
                                     ++k+
  Zmw_sc02063.1.g00040.1.sm.mk 243 --RFKA 246
                                   ..5555 PP
3B347.24.1e-15322427186
                                   EEEE-..-HHHHTT-EE--HHH.HTT......................---..--SEEEEEE.TTS..-EEEEEE..EEET CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......................ggkkeesktltled.esg..rsWevkliyrkks 56 
                                   +++++++ ++l++  l+lp kf++++                      g+   es t+tl++   +  rsW v    +   
  Zmw_sc02063.1.g00040.1.sm.mk 322 WITKEITTYMLEKI-LSLPVKFCDSIgfrkscittlkvatnstrswqiGLT--ESSTITLKTsI-NgaRSWPVCG-LTAAN 397
                                   56788899999986.***********5544444444444433333332222..33344444422.1457777766.35666 PP

                                   TEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                            B3  57 gryvltkGWkeFvkangLkegDfvvFkldg 86 
                                   g+y l++GWk+F ++n+Lk+gD+++F +++
  Zmw_sc02063.1.g00040.1.sm.mk 398 GSYHLGSGWKKFYEENKLKVGDICTFNVVK 427
                                   678888********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.03638145IPR003340B3 DNA binding domain
PfamPF023627.3E-1081143IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-1183146IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-1283147IPR015300DNA-binding pseudobarrel domain
CDDcd100176.87E-887143No hitNo description
PROSITE profilePS508639.19292145IPR003340B3 DNA binding domain
PROSITE profilePS5086311.646153250IPR003340B3 DNA binding domain
SMARTSM010191.2E-8157250IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-16165255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-14166250IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-9166245IPR003340B3 DNA binding domain
CDDcd100171.79E-11167247No hitNo description
SuperFamilySSF1019361.26E-13320437IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.015323434IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-15323437IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-11324427IPR003340B3 DNA binding domain
CDDcd100171.42E-8336423No hitNo description
PROSITE profilePS5086310.926372438IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MASSGDPVAP ARIKQLKVLL PRSVHKMVST IAIAVEHGCQ CNITGTKLIS LPGFKRISEE  60
LAGCFDVDGA ASAGGGEDGA REATALVVSP FGKVWRVGVG RDGEGAFLGR GWAEFLAAHG  120
IGVGWFVVLR HDGGDALTVK SFDTSFCIKD FGAPAAALKY LLDATEFLII PAKFLKDYVT  180
EEYLNIFCIS ILVSPLGKFW RIVLEKDQSG VFFADGWSQF LTSHGISEGD IVLLRYEGNM  240
VFRFKAFGLN GGQKDLKNQN TGVQQRTDTA KLSESPSPTR KRKSSDERSS SEENSRLKSC  300
MKSLNKTSAQ KQPDYQIGPP SWITKEITTY MLEKILSLPV KFCDSIGFRK SCITTLKVAT  360
NSTRSWQIGL TESSTITLKT SINGARSWPV CGLTAANGSY HLGSGWKKFY EENKLKVGDI  420
CTFNVVKTSL WQVDIARQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278283TRKRKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977888.11e-151putative B3 domain-containing protein Os04g0347400
TrEMBLA0A1E5W9E31e-151A0A1E5W9E3_9POAL; Putative B3 domain-containing protein
STRINGSi012086m1e-150(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187