PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02061.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

CO-like

Protein Properties

Length: 365aa MW: 39944.4 Da PI: 4.7908

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02061.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.8	3.5e-06	46	95	3	39
zf-B_box 3 erkCpeHeeke.lqlfCedCqqllCedClleeHkg.............Htv 39 e +C++++ + +C+ + lC +C + H g H++ Zmw_sc02061.1.g00130.1.sm.mkhc 46 EANCDNCDGPAlAAVYCRADAARLCLTCDRHVH-GangrrdgagepalHDR 95 789***9555*****************99.43555666666666655 PP
2	CCT	60.4	6.1e-21	322	364	3	45
CCT 3 aallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 ++RYkeKrktR+F+K++rYesRK++A+ R R+KGrF+k+++ Zmw_sc02061.1.g00130.1.sm.mkhc 322 SVISRYKEKRKTRRFDKQVRYESRKVRADGRLRIKGRFAKAKQ 364 5689************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00021	6.83E-4	49	78	No hit	No description
PROSITE profile	PS51017	14.743	320	362	IPR010402	CCT domain
Pfam	PF06203	1.4E-15	321	362	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MDQAEQRDRQ QLVVATEPEP PGEEEALKKA LPREADAEEA GAEPDEANCD NCDGPALAAV 60 YCRADAARLC LTCDRHVHGA NGRRDGAGEP ALHDRCTVQP YTGCPPASEL AALLGVPLFD 120 KPVGADGDGW WNFWEEPQVM SLEDLIVPTT PYHDFQPLLN PSSPKNRSIS PDAKMNEEIL 180 RQLGELAEAD SGVQAPAPTG HNEVELTGDQ FLTWAPPAQN NFSTHEIATM PTPGFENGRW 240 NSNDYHDLNG ACKVELSYER NPLSSAEGCL SSFVQISEIC PSMSNGSGME DNQHANPGVG 300 VPGQAVPKRS GFDVVPCPDR GSVISRYKEK RKTRRFDKQV RYESRKVRAD GRLRIKGRFA 360 KAKQI

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MDQAEQRDRQ QLVVATEPEP PGEEEALKKA LPREADAEEA GAEPDEANCD NCDGPALAAV  60
YCRADAARLC LTCDRHVHGA NGRRDGAGEP ALHDRCTVQP YTGCPPASEL AALLGVPLFD  120
KPVGADGDGW WNFWEEPQVM SLEDLIVPTT PYHDFQPLLN PSSPKNRSIS PDAKMNEEIL  180
RQLGELAEAD SGVQAPAPTG HNEVELTGDQ FLTWAPPAQN NFSTHEIATM PTPGFENGRW  240
NSNDYHDLNG ACKVELSYER NPLSSAEGCL SSFVQISEIC PSMSNGSGME DNQHANPGVG  300
VPGQAVPKRS GFDVVPCPDR GSVISRYKEK RKTRRFDKQV RYESRKVRAD GRLRIKGRFA  360
KAKQI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793690.1	1e-172	zinc finger protein CONSTANS-LIKE 13-like
TrEMBL	A0A1E5UIB6	1e-174	A0A1E5UIB6_9POAL; Uncharacterized protein
STRING	Pavir.J26263.1.p	1e-165	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3759	22	22