PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02051.1.g00200.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 529aa    MW: 56586.1 Da    PI: 4.3045
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02051.1.g00200.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12277322555
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   + e+ErrRR+++N ++ +Lr+l+P+      +K++ a+iL  A++YI  Lq
  Zmw_sc02051.1.g00200.1.am.mk 277 NLEAERRRRKKLNGRLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 322
                                   5689*********************7.....7***************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.37E-14270326No hitNo description
SuperFamilySSF474596.15E-18270341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.317272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10276322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-16278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-15279333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MRGGDHQSMA VAALAAASGG ATRMEAALRP LLGADAWDYY IYWRLWPEQR FLEMAGFCCS  60
SEFEPQVSTL GDLPGSILLD SPSGGMHAEA MVSNQPIWQT SGELGATGGP VTRLLVPVAG  120
GLVELVASRY MAEGEQMAEL VMAQCGVPER AAAAGTEGVQ AQPWAEPPGF AWDAVVPSLN  180
LFDAAGADPF LATQQASSAV VGDEAVAGWQ YEAAAAAGSE PVSVAVQQEQ LHAGRAESGS  240
DGSDLQGDRD PELDDDDGEQ GQAADGKGGG KRQQSKNLEA ERRRRKKLNG RLYKLRSLVP  300
NITKMDRASI LGDAIDYIVG LQNQVKALQD ELEDPDVLVD HPPPASLVGL ENDDSSPRTG  360
QHPLAGSKRS RAAAVAEEEK EEEKGHDMEP QVEVRQVEAN EFFLQLLCER KPGRFVRIMD  420
AVRALGLEVT NVNVTSYNSL VLNVFRAIMR DNEVAVQADR VRDSLLQVTR ESYGGVWSSA  480
AAPPVGSGID VKQLDAGEIK LDGIDAQQAS IAAEDDHYGG YNHLLQYLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-13270325257Transcription factor MYC2
5gnj_B5e-13270325257Transcription factor MYC2
5gnj_E5e-13270325257Transcription factor MYC2
5gnj_F5e-13270325257Transcription factor MYC2
5gnj_G5e-13270325257Transcription factor MYC2
5gnj_I5e-13270325257Transcription factor MYC2
5gnj_M5e-13270325257Transcription factor MYC2
5gnj_N5e-13270325257Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280287ERRRRKKL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565, ECO:0000269|PubMed:23385589}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825508.10.0transcription factor TDR-like
RefseqXP_025825517.10.0transcription factor TDR-like
RefseqXP_025825524.10.0transcription factor TDR-like
RefseqXP_025825535.10.0transcription factor TDR-like
RefseqXP_025825544.10.0transcription factor TDR-like
RefseqXP_025825551.10.0transcription factor TDR-like
RefseqXP_025825560.10.0transcription factor TDR-like
SwissprotQ6YUS31e-172TDR_ORYSJ; Transcription factor TDR
TrEMBLA0A2S3GKL90.0A0A2S3GKL9_9POAL; Uncharacterized protein
STRINGPavir.Ab00204.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55303449
Publications ? help Back to Top
  1. Endo M, et al.
    High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development.
    Plant Cell Physiol., 2009. 50(11): p. 1911-22
    [PMID:19808807]
  2. Xu J,Wu M,He C
    [Identification and functional analysis of Tdrxoo, the member of TonB-dependent-receptor family proteins in Xanthomonas oryzae pv. oryzae].
    Wei Sheng Wu Xue Bao, 2010. 50(2): p. 155-61
    [PMID:20387456]
  3. Liu Z,Bao W,Liang W,Yin J,Zhang D
    Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development.
    J Integr Plant Biol, 2010. 52(7): p. 670-8
    [PMID:20590996]
  4. Zhang D, et al.
    OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice.
    Plant Physiol., 2010. 154(1): p. 149-62
    [PMID:20610705]
  5. Senapati PK,Behera S
    Experimental investigation on an entrained flow type biomass gasification system using coconut coir dust as powdery biomass feedstock.
    Bioresour. Technol., 2012. 117: p. 99-106
    [PMID:22613886]
  6. Zhang SR,Dong DM,Zheng WG,Zhao XD,Wang JH
    [Laser-induced fluorescence spectroscopy characterization of farmland soil moisture content].
    Guang Pu Xue Yu Guang Pu Fen Xi, 2012. 32(10): p. 2623-7
    [PMID:23285852]
  7. Li L, et al.
    An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development.
    Planta, 2015. 241(1): p. 157-66
    [PMID:25236969]
  8. Yi J, et al.
    Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration.
    Plant Physiol., 2016. 170(3): p. 1611-23
    [PMID:26697896]