PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc02034.1.g00170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 352aa MW: 36468.4 Da PI: 7.8436 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.7 | 6.8e-18 | 248 | 282 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG+++++ +l Zmw_sc02034.1.g00170.1.am.mkhc 248 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 282 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.6E-16 | 242 | 292 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.227 | 246 | 278 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.6E-14 | 246 | 306 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.8E-13 | 246 | 280 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.32E-13 | 247 | 294 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 248 | 273 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.1E-15 | 248 | 282 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 352 aa Download sequence Send to blast |
MASEWEMAMG VDLGMGMSAY HPHYHHHNAS SVTTAPMSSH HSGGGGGSYN NYGMPPMGDA 60 MRVDTPLDLS NGTGAHEFFP TAAGAAAMGE PSPTANSSDH QTSLLSFADE FYIPSEEAAE 120 LEWLSKFVDD SYSDIPNYSS AAHAAMAATV AGNGGGNSTG QDSCVTAAPG RGARSKRSRA 180 TAAAAAAWHS LMPRPPAQSS PSSSCSSSDF PSSCPARPNG SNGSRGKKSP GPGGAPGEVG 240 LEGGVRRCTH CASEKTPQWR TGPLGPKTLC NACGVRFKSG RLVPEYRPAA SPTFVLTQHS 300 NSHRKVMELR RQKELVMIRG SHRDAAAAAA ASAAAGSAGP RPELMFRDYG VC |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795835.1 | 1e-171 | GATA transcription factor 2-like | ||||
Swissprot | O49741 | 2e-59 | GATA2_ARATH; GATA transcription factor 2 | ||||
TrEMBL | A0A1E5UY69 | 1e-169 | A0A1E5UY69_9POAL; GATA transcription factor | ||||
TrEMBL | A0A2S3INR4 | 1e-169 | A0A2S3INR4_9POAL; GATA transcription factor | ||||
TrEMBL | A0A2T7C9Z2 | 1e-169 | A0A2T7C9Z2_9POAL; GATA transcription factor | ||||
STRING | Si036273m | 1e-169 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4621 | 29 | 55 |
Publications ? help Back to Top | |||
---|---|---|---|
|