PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02028.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 150aa MW: 16456 Da PI: 10.8754 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.9 | 2.2e-08 | 33 | 80 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +WT E +lvd+v+++G g W+ I + Rt ++k++w+++ Zmw_sc02028.1.g00010.1.am.mkhc 33 AWTLCEVMKLVDGVALYGAGKWSEIRKLAFssySYRTSVDLKDKWRNL 80 7***************************999**99***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.635 | 26 | 85 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-12 | 28 | 84 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.28E-15 | 28 | 83 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-7 | 30 | 83 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.99E-17 | 32 | 82 | No hit | No description |
Pfam | PF00249 | 3.0E-6 | 33 | 80 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
VNAVKGGHAE AVENKGVRKP KKKQAFTRKH HRAWTLCEVM KLVDGVALYG AGKWSEIRKL 60 AFSSYSYRTS VDLKDKWRNL IRASKTQLHA IEDGGCPRKT NPSIIPIPPS ILLRVKELNE 120 LQSQGSGFAG PLQFSGSNGK VVQGKGSGFL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001169431.1 | 4e-65 | uncharacterized LOC100383302 | ||||
Refseq | XP_008644053.1 | 4e-65 | uncharacterized protein LOC100383302 isoform X1 | ||||
Refseq | XP_008644054.1 | 4e-65 | uncharacterized protein LOC100383302 isoform X2 | ||||
Refseq | XP_008644055.1 | 4e-65 | uncharacterized protein LOC100383302 isoform X5 | ||||
Refseq | XP_008644058.1 | 4e-65 | uncharacterized protein LOC100383302 isoform X6 | ||||
Refseq | XP_020409096.1 | 4e-65 | uncharacterized protein LOC100383302 isoform X1 | ||||
Refseq | XP_020409097.1 | 4e-65 | uncharacterized protein LOC100383302 isoform X1 | ||||
Refseq | XP_020409098.1 | 4e-65 | uncharacterized protein LOC100383302 isoform X4 | ||||
Refseq | XP_020409100.1 | 4e-65 | uncharacterized protein LOC100383302 isoform X5 | ||||
Refseq | XP_020409101.1 | 4e-65 | uncharacterized protein LOC100383302 isoform X4 | ||||
TrEMBL | A0A1D6HLX1 | 2e-67 | A0A1D6HLX1_MAIZE; TRF-like 6 | ||||
STRING | Pavir.J06110.1.p | 2e-68 | (Panicum virgatum) | ||||
STRING | GRMZM2G049194_P02 | 1e-64 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6966 | 33 | 41 |