PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02025.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 438aa    MW: 47945.6 Da    PI: 8.0199
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02025.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-17140187148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd +lv +v+++G+g+W++++   g+ R+ k+c++rw +yl
  Zmw_sc02025.1.g00050.1.am.mk 140 KGPWTPEEDIILVSYVQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYL 187
                                   79********************************************97 PP
2Myb_DNA-binding43.95.6e-14193238148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T+ E+ ++v++  +lG++ W++Ia+++   Rt++++k++w+++l
  Zmw_sc02025.1.g00050.1.am.mk 193 RGNFTPHEEGIIVHLQSLLGNR-WAAIASYLS-QRTDNDIKNYWNTHL 238
                                   89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF015543.6E-13388IPR002528Multi antimicrobial extrusion protein
Gene3DG3DSA:1.10.10.601.7E-22131190IPR009057Homeodomain-like
PROSITE profilePS5129425.638135191IPR017930Myb domain
SuperFamilySSF466899.8E-30137234IPR009057Homeodomain-like
SMARTSM007172.5E-13139189IPR001005SANT/Myb domain
PfamPF002494.9E-16140187IPR001005SANT/Myb domain
CDDcd001671.31E-11142187No hitNo description
Gene3DG3DSA:1.10.10.608.4E-23191243IPR009057Homeodomain-like
SMARTSM007176.6E-12192240IPR001005SANT/Myb domain
PROSITE profilePS5129417.77192242IPR017930Myb domain
PfamPF002491.1E-11193238IPR001005SANT/Myb domain
CDDcd001671.09E-7195236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006855Biological Processdrug transmembrane transport
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0015238Molecular Functiondrug transmembrane transporter activity
GO:0015297Molecular Functionantiporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MNVVITSFTI GFVLFILFLV FRGNLAYIFT ESRAVANAVA DLSPLLAFSI LLNSVQPVLS  60
GVAVGAGWQS VVAYVNITSY YLIGIPLGAH CRRQQGPEIS SILTTIDVDN RQQLAQPSCG  120
RPSPEKMGRP PCSDKVGIKK GPWTPEEDII LVSYVQEHGP GNWRSVPINT GLMRCSKSCR  180
LRWTNYLRPG IRRGNFTPHE EGIIVHLQSL LGNRWAAIAS YLSQRTDNDI KNYWNTHLKK  240
KLKKHQAIGA IFAPPPSGLL SSSTAPALTS TSHTDHPMMT SPLSKYNYAP RTDCRNPGDD  300
VTQLIARRSP FAAPAGSLDP ESSSYSSYAS SMDNISKLLD SFMKSITPQN DAAHIKPSSN  360
PLLSFEQVSG GGALSNFADV LPPQPVLMDE RSHHEQPKQQ QAQAPLSSIE KWLLDEAAEQ  420
VGDLIDQFDG CCSVPMLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-2513824225128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827828.11e-131transcription factor MYB30-like
SwissprotB3VTV73e-90MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A3L6P9F71e-137A0A3L6P9F7_PANMI; Transcription factor MYB30-like
STRINGSi026651m1e-126(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]