PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02012.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 230aa    MW: 25593.1 Da    PI: 8.4912
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02012.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.5e-17156203148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT eEd +lv +v+++G+g+W++++   g+ R+ k+c++rw +yl
  Zmw_sc02012.1.g00050.1.am.mk 156 KGPWTLEEDIILVSYVQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYL 203
                                   79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-22147206IPR009057Homeodomain-like
PROSITE profilePS5129424.635151207IPR017930Myb domain
SMARTSM007171.6E-12155205IPR001005SANT/Myb domain
PfamPF002491.5E-15156203IPR001005SANT/Myb domain
SuperFamilySSF466893.14E-21157230IPR009057Homeodomain-like
CDDcd001679.21E-12158203No hitNo description
Gene3DG3DSA:1.10.10.605.7E-6207230IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVERAPHPFP VSRPCGKPVA SPDETAKSGS ETPCHEDDRS PTGCQPPMAR RMTPAAPPWR  60
DPQYPTRLNE HYLFTVQALA GTRYPSILTT VDVDGSACAV YRGTPNSHKH DQDGCAVLLH  120
GMACYCATAD DRQQLRRPSP EKMGRPPCCD KVGIKKGPWT LEEDIILVSY VQEHGPGNWR  180
SVPINTGLMR CSKSCRLRWT NYLRPGIRRG NFTPHEDGII VHLQSLLGNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-1215423025100MYB TRANSFORMING PROTEIN
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296