PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02010.1.g00140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 575aa MW: 60838.2 Da PI: 7.4607 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.6 | 1.5e-17 | 363 | 397 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l Zmw_sc02010.1.g00140.1.am.mk 363 CLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRL 397 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.453 | 357 | 393 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.3E-18 | 357 | 407 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 7.7E-15 | 358 | 394 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 2.47E-15 | 359 | 420 | No hit | No description |
CDD | cd00202 | 5.33E-13 | 362 | 409 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 363 | 388 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.3E-15 | 363 | 397 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MQGRPDLIPR SPPAGRSYFI VTAIQWQPSR HRTDGERSAA GSPTWWLRGR TRGPRDVRIF 60 QGGLPAKSTW LDPRSRWIAP ARKDESFISA DCAPSSSSVL LHSALQRLRR VTAECRNGAV 120 RAKKDADLFL VDDLLDLPCD DDDEEEEEEE VVVEGEDTKA GVVSAAAHGD GEEGAAGNAS 180 NESSTVTALD SCSNSLSGLA DGGFSGGLCE PYDQLAELEW LSNYMGEDNF PTEDLRKLEL 240 ITGVPQAGTA ATKASASTPA PAPAQPCGGV LPPEAAVPAK ARSKRSRIAP FSWSSPLVVP 300 PPPPASPPSP ASAAISPSES GTGGTPAFSA KKPAKASKKK DSPTPPPAPT ATAAAPAGEG 360 RRCLHCETDK TPQWRTGPMG PKTLCNACGV RYKSGRLVPE YRPAASPTFV VSKHSNSHRK 420 VLELRRQKEV HQGGQAMPHP HPHHQHQHQS HHAHVGTGVG GGGLIHMPSL LLFDGPSAPL 480 LTEDFLLHNS SGTDVAGTAL DPISNHLAVK TLVRLCWIDS PATTSFGPIS GTVAWLTLAL 540 VLVRGVAAGD NVTCEEPGHG MHGSRPTRRR RVDFA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180765.1 | 1e-119 | GATA transcription factor 12-like | ||||
TrEMBL | A0A0A9PS03 | 1e-130 | A0A0A9PS03_ARUDO; GATA transcription factor | ||||
STRING | GRMZM2G135381_P01 | 1e-117 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3025 | 31 | 78 |