PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02010.1.g00140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 575aa    MW: 60838.2 Da    PI: 7.4607
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02010.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.5e-17363397135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Zmw_sc02010.1.g00140.1.am.mk 363 CLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRL 397
                                   99*****************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.453357393IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-18357407IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.7E-15358394IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.47E-15359420No hitNo description
CDDcd002025.33E-13362409No hitNo description
PROSITE patternPS003440363388IPR000679Zinc finger, GATA-type
PfamPF003202.3E-15363397IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MQGRPDLIPR SPPAGRSYFI VTAIQWQPSR HRTDGERSAA GSPTWWLRGR TRGPRDVRIF  60
QGGLPAKSTW LDPRSRWIAP ARKDESFISA DCAPSSSSVL LHSALQRLRR VTAECRNGAV  120
RAKKDADLFL VDDLLDLPCD DDDEEEEEEE VVVEGEDTKA GVVSAAAHGD GEEGAAGNAS  180
NESSTVTALD SCSNSLSGLA DGGFSGGLCE PYDQLAELEW LSNYMGEDNF PTEDLRKLEL  240
ITGVPQAGTA ATKASASTPA PAPAQPCGGV LPPEAAVPAK ARSKRSRIAP FSWSSPLVVP  300
PPPPASPPSP ASAAISPSES GTGGTPAFSA KKPAKASKKK DSPTPPPAPT ATAAAPAGEG  360
RRCLHCETDK TPQWRTGPMG PKTLCNACGV RYKSGRLVPE YRPAASPTFV VSKHSNSHRK  420
VLELRRQKEV HQGGQAMPHP HPHHQHQHQS HHAHVGTGVG GGGLIHMPSL LLFDGPSAPL  480
LTEDFLLHNS SGTDVAGTAL DPISNHLAVK TLVRLCWIDS PATTSFGPIS GTVAWLTLAL  540
VLVRGVAAGD NVTCEEPGHG MHGSRPTRRR RVDFA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180765.11e-119GATA transcription factor 12-like
TrEMBLA0A0A9PS031e-130A0A0A9PS03_ARUDO; GATA transcription factor
STRINGGRMZM2G135381_P011e-117(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178