PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02005.1.g00210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 229aa MW: 25520.8 Da PI: 6.3672 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.7 | 4.2e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ rqvtfskRr g++KKAeELSvLCda+va+++fsst kl ++s Zmw_sc02005.1.g00210.1.sm.mkhc 9 KRIESAAARQVTFSKRRCGLFKKAEELSVLCDADVALMVFSSTAKLSQFAS 59 79*********************************************9986 PP | |||||||
2 | K-box | 52.7 | 1.8e-18 | 87 | 171 | 18 | 99 |
K-box 18 qqelakLkkeienLq...reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 + e++k + +e+L + ++ Ge+Le+Ls++eL+qLe++Le +l ++ ++K++ +leqi++l +k +l een++ Zmw_sc02005.1.g00210.1.sm.mkhc 87 NLEYSKYANLNEQLAeasLRLSQMRGEELERLSVEELRQLEKNLEAGLHRVLQTKDQQFLEQIDDLHQKSSQLAEENMQ 165 4455555555555553337788********************************************************* PP K-box 94 Lrkkle 99 Lr+++ Zmw_sc02005.1.g00210.1.sm.mkhc 166 LRNQVS 171 **9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.534 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.2E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-27 | 1 | 73 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.72E-36 | 2 | 75 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-22 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-22 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-22 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.278 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.6E-16 | 91 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MARERRVIKR IESAAARQVT FSKRRCGLFK KAEELSVLCD ADVALMVFSS TAKLSQFASS 60 SMNEVIDKYN AHSKNLGKAD KPSLDLNLEY SKYANLNEQL AEASLRLSQM RGEELERLSV 120 EELRQLEKNL EAGLHRVLQT KDQQFLEQID DLHQKSSQLA EENMQLRNQV SQITPAVKQA 180 VVNAKNIVAE DGQSSESVMT ALHSGSSQDN DDGCLVFHGS NKVTAPLLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-19 | 1 | 73 | 1 | 73 | MEF2C |
5f28_B | 8e-19 | 1 | 73 | 1 | 73 | MEF2C |
5f28_C | 8e-19 | 1 | 73 | 1 | 73 | MEF2C |
5f28_D | 8e-19 | 1 | 73 | 1 | 73 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810223.1 | 1e-132 | MADS-box transcription factor 22 | ||||
Swissprot | Q9XJ66 | 1e-122 | MAD22_ORYSJ; MADS-box transcription factor 22 | ||||
TrEMBL | A0A3L6RPX9 | 1e-132 | A0A3L6RPX9_PANMI; MADS-box transcription factor 22 | ||||
STRING | GRMZM2G370777_P02 | 1e-135 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1221 | 36 | 97 |
Publications ? help Back to Top | |||
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