PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02005.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 939aa    MW: 102657 Da    PI: 8.3312
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02005.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-19519569155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+++GVr+++ +g+W+AeIrdp     +   r +lg+f+taeeAa+a++ a+ +++g
  Zmw_sc02005.1.g00020.1.am.mk 519 SKFRGVRRRP-WGKWAAEIRDP-----HraVRKWLGTFDTAEEAARAYDVAAVEFRG 569
                                   79********.**********7.....338***********************9998 PP
2AP256.19.2e-18810860155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+++GVr++  +g+W+AeIrdp+    r +r +lg+f+tae Aa+a++ a+ +++g
  Zmw_sc02005.1.g00020.1.am.mk 810 SKFRGVRRRQ-WGKWAAEIRDPY----RaARKWLGTFDTAEAAARAYDVAAVEFKG 860
                                   79*****887.**********74....57**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF514451.47E-5172329IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.5E-2975228IPR013781Glycoside hydrolase, catalytic domain
SMARTSM006421.3E-2275332IPR006047Glycosyl hydrolase, family 13, catalytic domain
CDDcd113141.67E-12176343No hitNo description
PfamPF001283.5E-1198172IPR006047Glycosyl hydrolase, family 13, catalytic domain
Gene3DG3DSA:3.20.20.801.3E-15229337IPR013781Glycoside hydrolase, catalytic domain
SMARTSM008109.7E-26333393IPR012850Alpha-amylase, C-terminal beta-sheet
PfamPF078211.8E-14334389IPR012850Alpha-amylase, C-terminal beta-sheet
SuperFamilySSF510118.63E-14337389No hitNo description
Gene3DG3DSA:2.60.40.11802.5E-21338389IPR013780Glycosyl hydrolase, all-beta
CDDcd000184.84E-30519579No hitNo description
PfamPF008478.4E-12519569IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-22519578IPR016177DNA-binding domain
SMARTSM003806.1E-36520583IPR001471AP2/ERF domain
PROSITE profilePS5103225.541520577IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-30520578IPR001471AP2/ERF domain
PRINTSPR003676.5E-10521532IPR001471AP2/ERF domain
PRINTSPR003676.5E-10543559IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-21810869IPR016177DNA-binding domain
PfamPF008474.5E-10810859IPR001471AP2/ERF domain
CDDcd000183.99E-17810868No hitNo description
SMARTSM003802.9E-32811874IPR001471AP2/ERF domain
PROSITE profilePS5103224.777811868IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-28811869IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004556Molecular Functionalpha-amylase activity
GO:0005509Molecular Functioncalcium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 939 aa     Download sequence    Send to blast
MFMGFCSEDV FLVVMKEMCR LAWVLVHLIL NKKSAATPER NRAAAESCKW SAGRFLTLAV  60
LIVFLGASKN YAAGQILFQG FNWESWKQQG GWYNLLMSKV EDIAEAGITH VWLPPPSHSV  120
AEQGYMPGRL YDLDASKYGN KAQLKSLIQA FHAKGVKVIA DIVINHRTAE HEDGRGIYCM  180
FEGGTPDSRL DWGPHMICRD DRHFDAWRLD FAKGYSADVA KPNYNQSAHR QELVNWVDRV  240
GRSGPATVFD FTTKGILNVA VEGEPPTAWR LAVTFVDNHD TGSTQHMWPF PSEKVMQGYA  300
YILTHPGNPC IFYDHFFDWG LKNEIAHLVS IRNRHGIHPE SELRIIASDA DLYLAEIDGK  360
VITKLGPRYD IEHLIPEGFQ IAAHGDGYAR PCATFLRHRR TGASMVPRLE RGGFTLPNAE  420
QENSLFLRAL ISVVSGDTAV PTLDDLAATK PHVAAATAPA AAAAYCPRCG VLGCPGCEPF  480
AGNAAATTGL SSDSEEERES ASHVVTGGVG KRRRRARASK FRGVRRRPWG KWAAEIRDPH  540
RAVRKWLGTF DTAEEAARAY DVAAVEFRGR RAKLNFPADA AAVLSAHSSW AMVQPVAESL  600
RESCGSNAAS PVGRLPADTT FQFTLSWIIG WLRRGSGLHS DCPISSTSEH NRNVPRTVEP  660
TTDCTPRSVA VPVGHLDRHV VFKVASFSRD RREHGAMAPR LGRGGFMLRN ADQEDSLFVS  720
ALISVVSGDT TAPTLDVAET KPDVAAAPAV YCARCGADGC PGRCEFFGAA DQAAATTGSS  780
GDSEEHEGES TSRVVTGGAG KRIRRRRRVS KFRGVRRRQW GKWAAEIRDP YRAARKWLGT  840
FDTAEAAARA YDVAAVEFKG PHAKLNFPAA APAATASSSA SAQALPPPQN LHEKCGSNAA  900
SPVHMAREPA GPPVAKDPEI WDGLNEIMMI DDGSFWRMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3wn6_A0.0753892399Alpha-amylase
3wn6_B0.0753892399Alpha-amylase
3wn6_C0.0753892399Alpha-amylase
3wn6_D0.0753892399Alpha-amylase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1510526KRRRRARASKFRGVRRR
2511527RRRRARASKFRGVRRRP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124