PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02003.1.g00200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 133aa MW: 14660.5 Da PI: 8.6105 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.6 | 2.5e-07 | 17 | 64 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT +++ +a + + + +W+ +ar+mg ++ +++ ++ ++ Zmw_sc02003.1.g00200.1.am.mk 17 AWTHRQNKQFECALAVYDRDtpdRWHNVARYMGGAKSTDEVRRHYEQL 64 7*****************99*************889*********876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.005 | 10 | 65 | IPR017877 | Myb-like domain |
SMART | SM00717 | 6.0E-5 | 14 | 67 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.16E-10 | 16 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.99E-6 | 17 | 65 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MATGGGSSKQ QGSSASAWTH RQNKQFECAL AVYDRDTPDR WHNVARYMGG AKSTDEVRRH 60 YEQLIEDVAQ IEAGQGPLFP SFAPAARGAA GLYNTARYCM LYYFVNQLPL GICMVAMPTC 120 RSSSSYRMHV SPG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-20 | 14 | 82 | 7 | 73 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q1A173 | 3e-25 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | J3MA34 | 5e-36 | J3MA34_ORYBR; Uncharacterized protein | ||||
STRING | OB05G34580.1 | 8e-37 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |